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BaseInfo

ncRNA ID bra-miR860-5p
Species Brassica rapa
Class miRNA
Genome position chrA6:17845504-17845618 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 17 - AUGUAGUCCAAUCUAUUGAAG - 37
Stem-loop(if miRNA) -        U                   C       G    --AG    C      U
 UGGUCAAG GUAAUGUAUGUAGUCCAAU UAUUGAA UACU    CACA CAUCUC A
 |||||||| ||||||||||||||||||| ||||||| ||||    |||| ||||||
 ACUAGUUU CAUUAUAUACAUCAGGUUA AUAACUU AUGA    GUGU GUAGAG G
A        U                   C       G    GUUG    A      U
Stem-loop sequence UGGUCAAGUGUAAUGUAUGUAGUCCAAUCUAUUGAAGUACUAGCACACCAUCUCUAGUGAGAUGAUGUGGUUGAGUAGUUCAAUACAUUGGACUACAUAUAUUACUUUUGAUCAA

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).