ncRNA ID | bra-miR5717 |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA6:17555972-17556083 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 26 - GUUUGGAUUGUUUGCCUUGGC - 46 |
Stem-loop(if miRNA) |
UCUCUCUC   C    U                             UUCAUUCACCAUC         UCU UCUA GAUCCCCAGUUUGGAUUGUUUGCCUUGGC             U         ||| |||| |||||||||||||||||||||||||||||             U         AGA AGAU CUAGGGGUCAAACCUAACAAACGGAACCG             C --------   -    U                             UCCAUUGCAAUCA |
Stem-loop sequence | UCUCUCUCUCUCUCUAUGAUCCCCAGUUUGGAUUGUUUGCCUUGGCUUCAUUCACCAUCUUCACUAACGUUACCUGCCAAGGCAAACAAUCCAAACUGGGGAUCUUAGAAGA |
1 | PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa"; Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y; J Exp Bot. 63:1025-1038(2012). |