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BaseInfo

ncRNA ID bra-miR5717
Species Brassica rapa
Class miRNA
Genome position chrA6:17555972-17556083 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 26 - GUUUGGAUUGUUUGCCUUGGC - 46
Stem-loop(if miRNA) UCUCUCUC   C    U                             UUCAUUCACCAUC
        UCU UCUA GAUCCCCAGUUUGGAUUGUUUGCCUUGGC             U
        ||| |||| |||||||||||||||||||||||||||||             U
        AGA AGAU CUAGGGGUCAAACCUAACAAACGGAACCG             C
--------   -    U                             UCCAUUGCAAUCA
Stem-loop sequence UCUCUCUCUCUCUCUAUGAUCCCCAGUUUGGAUUGUUUGCCUUGGCUUCAUUCACCAUCUUCACUAACGUUACCUGCCAAGGCAAACAAUCCAAACUGGGGAUCUUAGAAGA

Reference

1 PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa";
Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y;
J Exp Bot. 63:1025-1038(2012).