Search result

BaseInfo

ncRNA ID novel_gma_miR980
Species Glycine max
Class miRNA
Genome position Chr9:22201559-22201642 [-]
Reference genome Glycine_max_v2.0
Source SRR1451636;SRR1451619;SRR1451620
Length 22
Mature sequence(if miRNA) 1 - ACCAUCCCCAAUUGCCCACCUU - 22
Stem-loop(if miRNA) --     -    C   C     C -CAAAAC  AUAUCCCAUU
  GGUGG CAAU GGG GAUGG G       AA          U
  ||||| |||| ||| ||||| |       ||          C
  CCACC GUUA CCC CUACC C       CG          U
UU     C    A   -     A AUGAAUA  GACCCGAACA
Stem-loop sequence GGUGGCAAUCGGGCGAUGGCGCAAAACAAAUAUCCCAUUUCUACAAGCCCAGGCAUAAGUACACCAUCCCCAAUUGCCCACCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003534663.3
ncRNA:22   UUCCACCCGUUAACCCCUACCA   1
  |*||*||||||*||||||||||
targets:1170   AUGGGGGGCAAGUGGGGAUGGU   1191

2.5 PREDICTED: Glycine max probable F-box protein At4g22030 (LOC100801646), mRNA probable F-box protein At4g22030(LOC100801646) coding protein psRNATarget
XM_003534659.3
ncRNA:22   UUCCACCCGUUAACCCCUACCA   1
  |*|||||*|||*||||||||||
targets:1327   AUGGUGGACAAGUGGGGAUGGU   1348

2.5 PREDICTED: Glycine max probable F-box protein At4g22030 (LOC100799496), mRNA probable F-box protein At4g22030(LOC100799496) coding protein psRNATarget