Search result

BaseInfo

ncRNA ID	novel_gma_miR977
Species	Glycine max
Class	miRNA
Genome position	Chr9:320080-320165 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451636;SRR1451645
Length	20
Mature sequence(if miRNA)	1 - UUUCCUGCAUUUCUCAUUGC - 20
Stem-loop(if miRNA)	---     U C                  A          A AU    UUUCC G AUUUCUCAUUGCAUUAUG AAAAUCCAUU C  U    ||||| | |||||||||||||||||| |||||||||| |    AAAGG C UAAAGAGUAACGUAAUAC UUUUAGGUAA G  U ACA     U A                  C          - AC
Stem-loop sequence	UUUCCUGCAUUUCUCAUUGCAUUAUGAAAAAUCCAUUACAUUUCAGAAUGGAUUUUCCAUAAUGCAAUGAGAAAUACUGGAAAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006593763.2	ncRNA:20   CGUUACUCUUUACGUCCUUU   1   |||||||||||||*|||||| targets:1941   GCAAUGAGAAAUGGAGGAAA   1960 Target Full Sequence	1.5	PREDICTED: Glycine max amino acid permease 3 (LOC100775662), transcript variant X2, mRNA	amino acid permease 3(LOC100775662)	coding protein	psRNATarget
XM_006593762.2	ncRNA:20   CGUUACUCUUUACGUCCUUU   1   |||||||||||||*|||||| targets:2009   GCAAUGAGAAAUGGAGGAAA   2028 Target Full Sequence	1.5	PREDICTED: Glycine max amino acid permease 3 (LOC100775662), transcript variant X4, mRNA	amino acid permease 3(LOC100775662)	coding protein	psRNATarget
XM_014766415.1	ncRNA:20   CGUUACUCUUUACGUCCUUU   1   |||||||||||||*|||||| targets:2091   GCAAUGAGAAAUGGAGGAAA   2110 Target Full Sequence	1.5	PREDICTED: Glycine max amino acid permease 3 (LOC100775662), transcript variant X3, mRNA	amino acid permease 3(LOC100775662)	coding protein	psRNATarget
XM_003542097.3	ncRNA:20   CGUUACUCUUUACGUCCUUU   1   |||||||||||||*|||||| targets:2171   GCAAUGAGAAAUGGAGGAAA   2190 Target Full Sequence	1.5	PREDICTED: Glycine max amino acid permease 3 (LOC100775662), transcript variant X1, mRNA	amino acid permease 3(LOC100775662)	coding protein	psRNATarget
XM_003522610.3	ncRNA:20   CGUUACUCUUUACGUCCUUU   1   |||*||||*||||||||||| targets:1157   GCAUUGAGCAAUGCAGGAAA   1176 Target Full Sequence	2.5	PREDICTED: Glycine max protein MCM10 homolog (LOC100527758), mRNA	protein MCM10 homolog(LOC100527758)	coding protein	psRNATarget