Search result

BaseInfo

ncRNA ID	novel_gma_miR966
Species	Glycine max
Class	miRNA
Genome position	Chr6:18621607-18621726 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451636;SRR1451646
Length	24
Mature sequence(if miRNA)	1 - CGAAUCAAGUUGAUCCGUAAGACU - 24
Stem-loop(if miRNA)	--  A                          GGAUCAACUUG           CCUG     C A   CG AUCAAGUUGAUCCGUAAGACUCAUAC           AUCCGUAUGAG    ACAGA C A   || ||||||||||||||||||||||||||           |||||||||||    ||||| | G   GC UAGUUCAACUAGGCAUUCUGAGUAUG           UAGGUAUGCUC    UGUCU G U AU  C                          -----------           ACAA     A U
Stem-loop sequence	CGAAUCAAGUUGAUCCGUAAGACUCAUACGGAUCAACUUGAUCCGUAUGAGCCUGACAGACCAAGUUGAUCUGUAACACUCGUAUGGAUGUAUGAGUCUUACGGAUCAACUUGAUCCGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006600975.2	ncRNA:24   UCAGAAUGCCUAGUUGAACUAAGC   1   ||*||||||||||||||||||*|| targets:1247   AGCCUUACGGAUCAACUUGAUCCG   1270 Target Full Sequence	1.5	PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA	basic leucine zipper 9-like(LOC100776831)	coding protein	psRNATarget
XM_006593444.2	ncRNA:24   UCAGAAUGCCUAGUUGAACUAAGC   1   ||-|*||||||||||*|||||||| targets:3673   AG-CAUACGGAUCAAGUUGAUUCG   3695 Target Full Sequence	1.5	PREDICTED: Glycine max calcium-transporting ATPase 8, plasma membrane-type-like (LOC100813841), transcript variant X11, mRNA	calcium-transporting ATPase 8, plasma membrane-type-like(LOC100813841)	coding protein	psRNATarget
XM_003547498.3	ncRNA:24   UCAGAAUGCCUAGUUGAACUAAGC   1   ***||||=|||||||||||||*|| targets:452   CAACUUAUGGAUCAACUUGAUCCG   475 Target Full Sequence	2.5	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA	CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524)	coding protein	psRNATarget
XM_014768353.1	ncRNA:24   UCAGAAUGCCUAGUUGAACUAAGC   1   ***||||=|||||||||||||*|| targets:1047   CAACUUAUGGAUCAACUUGAUCCG   1070 Target Full Sequence	2.5	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA	CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524)	coding protein	psRNATarget