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BaseInfo

ncRNA ID novel_gma_miR965
Species Glycine max
Class miRNA
Genome position Chr5:11809068-11809178 [-]
Reference genome Glycine_max_v2.0
Source SRR1451636;SRR1451627
Length 22
Mature sequence(if miRNA) 90 - CAUUUCUUCCAUUACUAUAGUU - 111
Stem-loop(if miRNA) --                  AG          A       -AAUGGA  UAUGUCA
  CAUUUCUUCCAUUACUAU  UUUUGGGAAA UAAAUGA       GA       C
  ||||||||||||||||||  |||||||||| |||||||       ||       A
  GUAAAGAAGGUGAUGGUA  AAAGCCCUUU AUUUACU       GU       C
AG                  CG          -       AUGAGAG  AAUAAUA
Stem-loop sequence CAUUUCUUCCAUUACUAUAGUUUUGGGAAAAUAAAUGAAAUGGAGAUAUGUCACACAUAAUAAUGGAGAGUAUCAUUUAUUUCCCGAAAGCAUGGUAGUGGAAGAAAUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003538014.3
ncRNA:22   UUGAUAUCAUUACCUUCUUUAC   1
  *|=|||*|*|||||||||||||
targets:1932   CAUUAUUGGAAUGGAAGAAAUG   1953

2.0 PREDICTED: Glycine max protein PNS1 (LOC100801142), mRNA protein PNS1(LOC100801142) coding protein psRNATarget
XM_003535377.3
ncRNA:22   UUGAUAUCAUUACCUUCUUUAC   1
  ***|=|||||||||||*|||||
targets:145   UUGUGUAGUAAUGGAAAAAAUG   166

2.5 PREDICTED: Glycine max epsin-3 (LOC100784165), transcript variant X1, mRNA epsin-3(LOC100784165) coding protein psRNATarget