ncRNA ID | novel_gma_miR965 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr5:11809068-11809178 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451636;SRR1451627 |
Length | 22 |
Mature sequence(if miRNA) | 90 - CAUUUCUUCCAUUACUAUAGUU - 111 |
Stem-loop(if miRNA) |
--                  AG          A       -AAUGGA  UAUGUCA   CAUUUCUUCCAUUACUAU  UUUUGGGAAA UAAAUGA       GA       C   ||||||||||||||||||  |||||||||| |||||||       ||       A   GUAAAGAAGGUGAUGGUA  AAAGCCCUUU AUUUACU       GU       C AG                  CG          -       AUGAGAG  AAUAAUA |
Stem-loop sequence | CAUUUCUUCCAUUACUAUAGUUUUGGGAAAAUAAAUGAAAUGGAGAUAUGUCACACAUAAUAAUGGAGAGUAUCAUUUAUUUCCCGAAAGCAUGGUAGUGGAAGAAAUGGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003538014.3 |
|
2.0 | PREDICTED: Glycine max protein PNS1 (LOC100801142), mRNA | protein PNS1(LOC100801142) | coding protein | psRNATarget | |||||||||
XM_003535377.3 |
|
2.5 | PREDICTED: Glycine max epsin-3 (LOC100784165), transcript variant X1, mRNA | epsin-3(LOC100784165) | coding protein | psRNATarget |