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BaseInfo

ncRNA ID	bra-miR171d
Species	Brassica rapa
Class	miRNA
Genome position	chrA6:4092008-4092108 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	9 - UUGAGCCGUGCCAAUAUCACG - 29
Stem-loop(if miRNA)	-A     A      A UG          A     --   UGU    ACU GGU  ACGCG GAUAUU G  CGGUUCAAUC AAUAG  UCG   UCUC   U |||  ||||| |||||| |  |||||||||| |||||  |||   |||| CCA  UGCGC CUAUAA C  GCCGAGUUAG UUGUU  GGC   AGAG   G    AC     A      C GU          C     UU   --U    AUA
Stem-loop sequence	GGUAACGCGAGAUAUUAGUGCGGUUCAAUCAAAUAGUCGUGUUCUCACUUGAUAGAGAUCGGUUUUGUUCGAUUGAGCCGUGCCAAUAUCACGCGUCAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009116447.2	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|||||||||*|||||||||| targets:639   GGUGAUAUUGUCACGGCUCAA   659 Target Full Sequence	1.5	PREDICTED: Brassica rapa scarecrow-like protein 15 (LOC103839968), mRNA	scarecrow-like protein 15(LOC103839968)	coding protein	psRNATarget
XM_009138366.2	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   =|*|||||||||=|||||||| targets:1181   UGAGAUAUUGGCGCGGCUCAA   1201 Target Full Sequence	2.5	PREDICTED: Brassica rapa protein IQ-DOMAIN 31-like (LOC103860708), mRNA	protein IQ-DOMAIN 31-like(LOC103860708)	coding protein	psRNATarget
XM_009113266.2	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:897   GGGGAUAUUGGCGCGGCUCAA   917 Target Full Sequence	2.5	PREDICTED: Brassica rapa scarecrow-like protein 6 (LOC103836942), mRNA	scarecrow-like protein 6(LOC103836942)	coding protein	psRNATarget
XM_009135460.2	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:928   AGGGAUAUUGGCGCGGCUCAA   948 Target Full Sequence	2.5	PREDICTED: Brassica rapa scarecrow-like protein 27 (LOC103858159), mRNA	scarecrow-like protein 27(LOC103858159)	coding protein	psRNATarget
XM_009140575.2	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:880   AGGGAUAUUGGCGCGGCUCAA   900 Target Full Sequence	2.5	PREDICTED: Brassica rapa scarecrow-like protein 22 (LOC103862870), mRNA	scarecrow-like protein 22(LOC103862870)	coding protein	psRNATarget
XM_009105848.2	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:1078   AGGGAUAUUGGCGCGGCUCAA   1098 Target Full Sequence	2.5	PREDICTED: Brassica rapa scarecrow-like protein 27 (LOC103830132), mRNA	scarecrow-like protein 27(LOC103830132)	coding protein	psRNATarget

Reference

1	PMID:18558089 "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"; He XF, Fang YY, Feng L, Guo HS; FEBS Lett. 582:2445-2452(2008).