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BaseInfo

ncRNA ID ath-miR5021
Species Arabidopsis thaliana
Class miRNA
Genome position chr2:11974711-11974881 [-]
Reference genome TAIR10
Source miRBase
Length 20
Mature sequence(if miRNA) 112 - UGAGAAGAAGAAGAAGAAAA - 131
Stem-loop(if miRNA)     U      GAAUUU       G GA      GAGG   -           G  G  -   AGU   -U       U   --G     U
GUAG GAUGAU      GAGAUUU G  GAGGGA    AUU GAGAAGAAGAA AA AA AAG   GAU  UGAGAGU CAU   GGUCU G
|||| ||||||      ||||||| |  ||||||    ||| ||||||||||| || || |||   |||  ||||||| |||   |||||
UAUC CUGCUG      UUUUGAG U  CUUCUU    UAA CUCUUCUUCUU UU UU UUC   CUA  GCUUUCA GUG   UUAGA A
    U      ------       G AA      -GAA   U           G  G  G   CUU   UU       -   AUU     A
Stem-loop sequence GUAGUGAUGAUGAAUUUGAGAUUUGGGAGAGGGAGAGGAUUGAGAAGAAGAAGAAGAAAAGAGUGAUUUGAGAGUUCAUGGGUCUUGAAAGAUUUUAGUGACUUUCGUUAUCUUCCUUGUUGUUGUUCUUCUUCUCUAAUAAGUUCUUCAAUGGAGUUUUGUCGUCUCUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_100239.8
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||||
targets:189   UUUUCUUCUUCUUCUUCUCA   208

0.0 Arabidopsis thaliana Protein phosphatase 2C family protein mRNA Protein phosphatase 2C family protein(AT1G03590) coding protein psRNATarget
NM_128370.3
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||||
targets:160   UUUUCUUCUUCUUCUUCUCA   179

0.0 Arabidopsis thaliana alpha-L-fucosidase 1 (FUC1), mRNA alpha-L-fucosidase 1(FUC1) coding protein psRNATarget
AK119039.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||||
targets:160   UUUUCUUCUUCUUCUUCUCA   179

0.0 Arabidopsis thaliana At2g28100 mRNA for unknown protein, complete cds, clone: RAFL21-36-K08 NA coding protein psRNATarget
BX819533.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||||
targets:34   UUUUCUUCUUCUUCUUCUCA   53

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB87ZF08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_102802.2
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  *|||||||||||||||||||
targets:176   CUUUCUUCUUCUUCUUCUCA   195

0.0 Arabidopsis thaliana WRKY DNA-binding protein 14 (WRKY14), mRNA WRKY DNA-binding protein 14(WRKY14) coding protein psRNATarget
AY085482.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  *|||||||||||||||||||
targets:91   CUUUCUUCUUCUUCUUCUCA   110

0.0 Arabidopsis thaliana clone 153465 mRNA, complete sequence NA coding protein psRNATarget
BX815997.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  *|||||||||||||||||||
targets:66   CUUUCUUCUUCUUCUUCUCA   85

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH21ZF11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AK228343.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  *|||||||||||||||||||
targets:32   CUUUCUUCUUCUUCUUCUCA   51

0.0 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-76-G23 NA coding protein psRNATarget
NM_115776.4
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  |||||||||||||||||||*
targets:156   UUUUCUUCUUCUUCUUCUCU   175

1.0 Arabidopsis thaliana multidrug resistance-associated protein 14 (ABCC10), mRNA multidrug resistance-associated protein 14(ABCC10) coding protein psRNATarget
NM_001341787.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  |||||||||||||||||||*
targets:136   UUUUCUUCUUCUUCUUCUCC   155

1.0 Arabidopsis thaliana Haloacid dehalogenase-like hydrolase (HAD) superfamily protein mRNA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(AT4G26190) coding protein psRNATarget
NM_001341788.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  |||||||||||||||||||*
targets:118   UUUUCUUCUUCUUCUUCUCC   137

1.0 Arabidopsis thaliana Haloacid dehalogenase-like hydrolase (HAD) superfamily protein mRNA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(AT4G26190) coding protein psRNATarget
NM_001085035.2
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  |||||||||||||||||||*
targets:81   UUUUCUUCUUCUUCUUCUCU   100

1.0 Arabidopsis thaliana mitogen-activated protein kinase kinase kinase 21 (MAPKKK21), mRNA mitogen-activated protein kinase kinase kinase 21(MAPKKK21) coding protein psRNATarget
NM_105758.4
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  |||||||||||||||||||*
targets:37   UUUUCUUCUUCUUCUUCUCC   56

1.0 Arabidopsis thaliana hypothetical protein mRNA hypothetical protein(AT1G70900) coding protein psRNATarget
AY070367.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  |||||||||||||||||||*
targets:28   UUUUCUUCUUCUUCUUCUCU   47

1.0 Arabidopsis thaliana unknown protein (At4g36950) mRNA, complete cds NA coding protein psRNATarget
NM_123494.2
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  |||||||||||||||||||*
targets:116   UUUUCUUCUUCUUCUUCUCU   135

1.0 Arabidopsis thaliana Receptor-like protein kinase-related family protein mRNA Receptor-like protein kinase-related family protein(AT5G41290) coding protein psRNATarget
NM_113195.4
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  |||||||||||||||||||*
targets:94   UUUUCUUCUUCUUCUUCUCU   113

1.0 Arabidopsis thaliana ADP-ribosylation factor C1 (ARFC1), mRNA ADP-ribosylation factor C1(ARFC1) coding protein psRNATarget
NM_001203022.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  |||||||||||||||||||*
targets:94   UUUUCUUCUUCUUCUUCUCU   113

1.0 Arabidopsis thaliana ADP-ribosylation factor C1 (ARFC1), mRNA ADP-ribosylation factor C1(ARFC1) coding protein psRNATarget
AY063958.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  |||||||||||||||||||*
targets:3   UUUUCUUCUUCUUCUUCUCU   22

1.0 Arabidopsis thaliana putative ADP-ribosylation factor (At3g22950) mRNA, complete cds NA coding protein psRNATarget
AY086337.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  |||||||||||||||||||*
targets:20   UUUUCUUCUUCUUCUUCUCU   39

1.0 Arabidopsis thaliana clone 24097 mRNA, complete sequence NA coding protein psRNATarget
NM_102610.4
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  *||||||||||||||||||*
targets:435   GUUUCUUCUUCUUCUUCUCU   454

1.0 Arabidopsis thaliana homeobox-1 (HB-1), mRNA homeobox-1(HB-1) coding protein psRNATarget
NM_126592.3
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=|
targets:118   UUUUCUUCUUCUUCUUCUUA   137

1.5 Arabidopsis thaliana Xanthine/uracil permease family protein mRNA Xanthine/uracil permease family protein(AT2G05760) coding protein psRNATarget
BX820194.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  |||||||||||||=||||||
targets:1444   UUUUCUUCUUCUUUUUCUCA   1463

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS90ZH07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_101286.3
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=|
targets:107   UUUUCUUCUUCUUCUUCUUA   126

1.5 Arabidopsis thaliana RING/U-box superfamily protein mRNA RING/U-box superfamily protein(AT1G14200) coding protein psRNATarget
AK227511.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=|
targets:20   UUUUCUUCUUCUUCUUCUUA   39

1.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-12-O06 NA coding protein psRNATarget
NM_113027.3
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  *|||||||||||||||||=|
targets:338   CUUUCUUCUUCUUCUUCUUA   357

1.5 Arabidopsis thaliana EARLY FLOWERING protein mRNA EARLY FLOWERING protein(AT3G21320) coding protein psRNATarget
AY800623.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  *|||||||||||||||||=|
targets:291   CUUUCUUCUUCUUCUUCUUA   310

1.5 Arabidopsis thaliana clone H0000001218 hypothetical protein (AT3G21320) mRNA, complete cds NA coding protein psRNATarget
NM_115014.5
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:245   UUCUUCUUCUUCUUCUUCUCA   265

2.0 Arabidopsis thaliana Malectin/receptor-like protein kinase family protein (FER), mRNA Malectin/receptor-like protein kinase family protein(FER) coding protein psRNATarget
AY035053.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:140   UUCUUCUUCUUCUUCUUCUCA   160

2.0 Arabidopsis thaliana putative receptor-protein kinase (At3g51550) mRNA, complete cds NA coding protein psRNATarget
BX824707.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:77   UUCUUCUUCUUCUUCUUCUCA   97

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH66ZE03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_122376.4
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:597   UUCUUCUUCUUCUUCUUCUCA   617

2.0 Arabidopsis thaliana Cytidine/deoxycytidylate deaminase family protein (EMB2820), mRNA Cytidine/deoxycytidylate deaminase family protein(EMB2820) coding protein psRNATarget
NM_001343891.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:520   UUCUUCUUCUUCUUCUUCUCA   540

2.0 Arabidopsis thaliana Cytidine/deoxycytidylate deaminase family protein (EMB2820), mRNA Cytidine/deoxycytidylate deaminase family protein(EMB2820) coding protein psRNATarget
NM_116741.4
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:279   UUCUUCUUCUUCUUCUUCUCA   299

2.0 Arabidopsis thaliana NAD(P)H dehydrogenase B2 (NDB2), mRNA NAD(P)H dehydrogenase B2(NDB2) coding protein psRNATarget
NM_001203749.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:85   UUCUUCUUCUUCUUCUUCUCA   105

2.0 Arabidopsis thaliana NAD(P)H dehydrogenase B2 (NDB2), mRNA NAD(P)H dehydrogenase B2(NDB2) coding protein psRNATarget
AY039856.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:11   UUCUUCUUCUUCUUCUUCUCA   31

2.0 Arabidopsis thaliana AT4g05020/T32N4_4 mRNA, complete cds NA coding protein psRNATarget
BX832136.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:709   UUCUUCUUCUUCUUCUUCUCA   729

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH54ZB03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_001343974.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:339   UUCUUCUUCUUCUUCUUCUCA   359

2.0 Arabidopsis thaliana Pectinacetylesterase family protein mRNA Pectinacetylesterase family protein(AT5G26670) coding protein psRNATarget
NM_001343892.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:140   UUCUUCUUCUUCUUCUUCUCA   160

2.0 Arabidopsis thaliana Cytidine/deoxycytidylate deaminase family protein (EMB2820), mRNA Cytidine/deoxycytidylate deaminase family protein(EMB2820) coding protein psRNATarget
NM_106033.4
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:284   UUCUUCUUCUUCUUCUUCUCA   304

2.0 Arabidopsis thaliana UDP-Glycosyltransferase superfamily protein mRNA UDP-Glycosyltransferase superfamily protein(AT1G73740) coding protein psRNATarget
NM_001343893.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:140   UUCUUCUUCUUCUUCUUCUCA   160

2.0 Arabidopsis thaliana Cytidine/deoxycytidylate deaminase family protein (EMB2820), mRNA Cytidine/deoxycytidylate deaminase family protein(EMB2820) coding protein psRNATarget
NM_180547.3
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:339   UUCUUCUUCUUCUUCUUCUCA   359

2.0 Arabidopsis thaliana Pectinacetylesterase family protein mRNA Pectinacetylesterase family protein(AT5G26670) coding protein psRNATarget
NM_111546.4
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:196   UUCUUCUUCUUCUUCUUCUCA   216

2.0 Arabidopsis thaliana PAPA-1-like family protein / zinc finger (HIT type) family protein mRNA PAPA-1-like family protein / zinc finger (HIT type) family protein(AT3G06660) coding protein psRNATarget
NM_001203457.2
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:140   UUCUUCUUCUUCUUCUUCUCA   160

2.0 Arabidopsis thaliana Cytidine/deoxycytidylate deaminase family protein (EMB2820), mRNA Cytidine/deoxycytidylate deaminase family protein(EMB2820) coding protein psRNATarget
NM_001343566.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:260   UUCUUCUUCUUCUUCUUCUCA   280

2.0 Arabidopsis thaliana RING/U-box superfamily protein mRNA RING/U-box superfamily protein(AT5G18760) coding protein psRNATarget
AY034922.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:41   UUCUUCUUCUUCUUCUUCUCA   61

2.0 Arabidopsis thaliana unknown protein (At3g06660) mRNA, complete cds NA coding protein psRNATarget
NM_121881.4
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:260   UUCUUCUUCUUCUUCUUCUCA   280

2.0 Arabidopsis thaliana RING/U-box superfamily protein mRNA RING/U-box superfamily protein(AT5G18760) coding protein psRNATarget
NM_104243.4
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:108   UUCUUCUUCUUCUUCUUCUCA   128

2.0 Arabidopsis thaliana CTC-interacting domain 8 (CID8), mRNA CTC-interacting domain 8(CID8) coding protein psRNATarget
AK317140.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:27   UUCUUCUUCUUCUUCUUCUCA   47

2.0 Arabidopsis thaliana AT5G26670 mRNA, complete cds, clone: RAFL21-52-C10 NA coding protein psRNATarget
AY059826.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:29   UUCUUCUUCUUCUUCUUCUCA   49

2.0 Arabidopsis thaliana putative UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)- pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (At1g73740; F25P22.16) mRNA, complete cds NA coding protein psRNATarget
BX815741.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:6   UUCUUCUUCUUCUUCUUCUCA   26

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS8ZE08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX831779.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:25   UUCUUCUUCUUCUUCUUCUCA   45

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH29ZD06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX830239.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:174   UUCUUCUUCUUCUUCUUCUCA   194

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB68ZD05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AK118837.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:124   UUCUUCUUCUUCUUCUUCUCA   144

2.0 Arabidopsis thaliana At5g18760 mRNA for unknown protein, complete cds, clone: RAFL21-16-M15 NA coding protein psRNATarget
AK228304.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:27   UUCUUCUUCUUCUUCUUCUCA   47

2.0 Arabidopsis thaliana mRNA for pectin acetylesterase precursor - like protein, complete cds, clone: RAFL14-74-B19 NA coding protein psRNATarget
NM_203108.2
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:27   UUCUUCUUCUUCUUCUUCUCA   47

2.0 Arabidopsis thaliana Pectinacetylesterase family protein mRNA Pectinacetylesterase family protein(AT5G26670) coding protein psRNATarget
BX830877.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:129   UUCUUCUUCUUCUUCUUCUCA   149

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS34ZG02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX830983.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:145   UUCUUCUUCUUCUUCUUCUCA   165

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS46ZA08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX830106.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:173   UUCUUCUUCUUCUUCUUCUCA   193

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB5ZF04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX829785.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:6   UUCUUCUUCUUCUUCUUCUCA   26

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB36ZH08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX832630.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:129   UUCUUCUUCUUCUUCUUCUCA   149

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH85ZE09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX816035.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:55   UUCUUCUUCUUCUUCUUCUCA   75

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH24ZB09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX831783.1
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-||||||||||||||||||
targets:178   UUCUUCUUCUUCUUCUUCUCA   198

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH29ZF11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_001334382.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||=|||||||||||||=|
targets:524   UUUUUUUCUUCUUCUUCUUA   543

2.5 Arabidopsis thaliana Transmembrane Fragile-X-F-associated protein mRNA Transmembrane Fragile-X-F-associated protein(AT1G68820) coding protein psRNATarget
NM_001334383.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||=|||||||||||||=|
targets:524   UUUUUUUCUUCUUCUUCUUA   543

2.5 Arabidopsis thaliana Transmembrane Fragile-X-F-associated protein mRNA Transmembrane Fragile-X-F-associated protein(AT1G68820) coding protein psRNATarget
NM_114228.3
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:5057   UUUUCUUCUUCUUCUUCUUC   5076

2.5 Arabidopsis thaliana aldehyde oxidase 2 (AAO2), mRNA aldehyde oxidase 2(AAO2) coding protein psRNATarget
NM_001332760.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:258   UUUUCUUCUUCUUCUUCUUC   277

2.5 Arabidopsis thaliana GYF domain-containing protein mRNA GYF domain-containing protein(AT1G27430) coding protein psRNATarget
NM_102506.5
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:258   UUUUCUUCUUCUUCUUCUUC   277

2.5 Arabidopsis thaliana GYF domain-containing protein mRNA GYF domain-containing protein(AT1G27430) coding protein psRNATarget
NM_001332761.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:134   UUUUCUUCUUCUUCUUCUUC   153

2.5 Arabidopsis thaliana GYF domain-containing protein mRNA GYF domain-containing protein(AT1G27430) coding protein psRNATarget
NM_106686.3
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||==
targets:94   UUUUCUUCUUCUUCUUCUUG   113

2.5 Arabidopsis thaliana Cyclin A2;4 (CYCA2;4), mRNA Cyclin A2;4(CYCA2;4) coding protein psRNATarget
NM_116269.4
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:887   UUUUCUUCUUCUUCUUCUUC   906

2.5 Arabidopsis thaliana GPI-anchored adhesin-like protein, putative (DUF3741) (TRM15), mRNA GPI-anchored adhesin-like protein, putative (DUF3741)(TRM15) coding protein psRNATarget
NM_001084870.2
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:887   UUUUCUUCUUCUUCUUCUUC   906

2.5 Arabidopsis thaliana GPI-anchored adhesin-like protein, putative (DUF3741) (TRM15), mRNA GPI-anchored adhesin-like protein, putative (DUF3741)(TRM15) coding protein psRNATarget
NM_001345521.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||==
targets:131   UUUUCUUCUUCUUCUUCUUG   150

2.5 Arabidopsis thaliana BCL-2-associated athanogene 2 (BAG2), mRNA BCL-2-associated athanogene 2(BAG2) coding protein psRNATarget
NM_101853.6
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||=|||||||||||||=|
targets:71   UUUUUUUCUUCUUCUUCUUA   90

2.5 Arabidopsis thaliana cytomatrix protein-like protein mRNA cytomatrix protein-like protein(AT1G19980) coding protein psRNATarget
NM_001340247.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:697   UUUUCUUCUUCUUCUUCUUC   716

2.5 Arabidopsis thaliana GPI-anchored adhesin-like protein, putative (DUF3741) (TRM15), mRNA GPI-anchored adhesin-like protein, putative (DUF3741)(TRM15) coding protein psRNATarget
BT008655.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:536   UUUUCUUCUUCUUCUUCUUC   555

2.5 Arabidopsis thaliana clone RAFL09-89-D06 (R19838) unknown protein (At4g00440) mRNA, complete cds NA coding protein psRNATarget
AK227177.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:537   UUUUCUUCUUCUUCUUCUUC   556

2.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-89-D06 NA coding protein psRNATarget
BT003883.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||=|||||||||||||=|
targets:51   UUUUUUUCUUCUUCUUCUUA   70

2.5 Arabidopsis thaliana clone RAFL15-26-B14 (R20602) unknown protein (At1g19980) mRNA, complete cds NA coding protein psRNATarget
NM_001345523.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||==
targets:131   UUUUCUUCUUCUUCUUCUUG   150

2.5 Arabidopsis thaliana BCL-2-associated athanogene 2 (BAG2), mRNA BCL-2-associated athanogene 2(BAG2) coding protein psRNATarget
NM_001084869.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:536   UUUUCUUCUUCUUCUUCUUC   555

2.5 Arabidopsis thaliana GPI-anchored adhesin-like protein, putative (DUF3741) (TRM15), mRNA GPI-anchored adhesin-like protein, putative (DUF3741)(TRM15) coding protein psRNATarget
BX814840.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||=|||||||||||||=|
targets:37   UUUUUUUCUUCUUCUUCUUA   56

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS10ZE12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX813955.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||=|||||||||||||=|
targets:55   UUUUUUUCUUCUUCUUCUUA   74

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB4ZA08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_001341677.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:19   UUUUCUUCUUCUUCUUCUUC   38

2.5 Arabidopsis thaliana Protein kinase superfamily protein mRNA Protein kinase superfamily protein(AT4G24480) coding protein psRNATarget
AK318677.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:429   UUUUCUUCUUCUUCUUCUUC   448

2.5 Arabidopsis thaliana AT4G00440 mRNA, complete cds, clone: RAFL07-91-D14 NA coding protein psRNATarget
NM_001338662.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:4   UUUUCUUCUUCUUCUUCUUC   23

2.5 Arabidopsis thaliana RNA recognition motif (RRM)-containing protein mRNA RNA recognition motif (RRM)-containing protein(AT3G23900) coding protein psRNATarget
NM_113295.3
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:9   UUUUCUUCUUCUUCUUCUUC   28

2.5 Arabidopsis thaliana RNA recognition motif (RRM)-containing protein mRNA RNA recognition motif (RRM)-containing protein(AT3G23900) coding protein psRNATarget
NM_118581.3
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:17   UUUUCUUCUUCUUCUUCUUC   36

2.5 Arabidopsis thaliana Protein kinase superfamily protein mRNA Protein kinase superfamily protein(AT4G24480) coding protein psRNATarget
NM_179170.3
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:485   UUUUCUUCUUCUUCUUCUUC   504

2.5 Arabidopsis thaliana phospholipase D delta (PLDDELTA), mRNA phospholipase D delta(PLDDELTA) coding protein psRNATarget
NM_001345522.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||==
targets:184   UUUUCUUCUUCUUCUUCUUG   203

2.5 Arabidopsis thaliana BCL-2-associated athanogene 2 (BAG2), mRNA BCL-2-associated athanogene 2(BAG2) coding protein psRNATarget
NM_001203029.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:2   UUUUCUUCUUCUUCUUCUUC   21

2.5 Arabidopsis thaliana RNA recognition motif (RRM)-containing protein mRNA RNA recognition motif (RRM)-containing protein(AT3G23900) coding protein psRNATarget
NM_001341678.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:17   UUUUCUUCUUCUUCUUCUUC   36

2.5 Arabidopsis thaliana Protein kinase superfamily protein mRNA Protein kinase superfamily protein(AT4G24480) coding protein psRNATarget
NM_125603.3
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||==
targets:184   UUUUCUUCUUCUUCUUCUUG   203

2.5 Arabidopsis thaliana BCL-2-associated athanogene 2 (BAG2), mRNA BCL-2-associated athanogene 2(BAG2) coding protein psRNATarget
NM_122582.2
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:76   UUUUCUUCUUCUUCUUCUUC   95

2.5 Arabidopsis thaliana kinesin 4 (ATK4), mRNA kinesin 4(ATK4) coding protein psRNATarget
NM_179171.2
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:248   UUUUCUUCUUCUUCUUCUUC   267

2.5 Arabidopsis thaliana phospholipase D delta (PLDDELTA), mRNA phospholipase D delta(PLDDELTA) coding protein psRNATarget
NM_001345524.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||==
targets:76   UUUUCUUCUUCUUCUUCUUG   95

2.5 Arabidopsis thaliana BCL-2-associated athanogene 2 (BAG2), mRNA BCL-2-associated athanogene 2(BAG2) coding protein psRNATarget
NM_119745.3
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:248   UUUUCUUCUUCUUCUUCUUC   267

2.5 Arabidopsis thaliana phospholipase D delta (PLDDELTA), mRNA phospholipase D delta(PLDDELTA) coding protein psRNATarget
NM_113112.4
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:121   UUUUCUUCUUCUUCUUCUUC   140

2.5 Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein mRNA Tetratricopeptide repeat (TPR)-like superfamily protein(AT3G22150) coding protein psRNATarget
NM_112192.5
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:285   UUUUCUUCUUCUUCUUCUUU   304

2.5 Arabidopsis thaliana evolutionarily conserved C-terminal region 2 (ECT2), mRNA evolutionarily conserved C-terminal region 2(ECT2) coding protein psRNATarget
NM_001338570.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:136   UUUUCUUCUUCUUCUUCUUC   155

2.5 Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein mRNA Tetratricopeptide repeat (TPR)-like superfamily protein(AT3G22150) coding protein psRNATarget
AK229803.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:53   UUUUCUUCUUCUUCUUCUUC   72

2.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-85-B14 NA coding protein psRNATarget
BX829136.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||=||=||||||||||||
targets:1147   UUUUUUUUUUCUUCUUCUCA   1166

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL74ZF02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY079017.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:44   UUUUCUUCUUCUUCUUCUUC   63

2.5 Arabidopsis thaliana AT4g35790/F4B14_60 mRNA, complete sequence NA coding protein psRNATarget
AK227213.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:91   UUUUCUUCUUCUUCUUCUUC   110

2.5 Arabidopsis thaliana mRNA for phospholipase D, complete cds, clone: RAFL09-96-G01 NA coding protein psRNATarget
NM_179229.2
ncRNA:20   AA--AAGAAGAAGAAGAAGAGU   1
  ||--||||||||||||||||||
targets:80   UUCCUUCUUCUUCUUCUUCUCA   101

2.5 Arabidopsis thaliana Protein kinase superfamily protein mRNA Protein kinase superfamily protein(AT4G32250) coding protein psRNATarget
AF424632.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:92   UUUUCUUCUUCUUCUUCUUC   111

2.5 Arabidopsis thaliana AT4g35790/F4B14_60 mRNA, complete cds NA coding protein psRNATarget
AB031047.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:62   UUUUCUUCUUCUUCUUCUUC   81

2.5 Arabidopsis thaliana AtPLDdelta mRNA for phospholipase D, complete cds NA coding protein psRNATarget
NM_001345063.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:509   UUUUCUUCUUCUUCUUCUUC   528

2.5 Arabidopsis thaliana YELLOW STRIPE like 3 (YSL3), mRNA YELLOW STRIPE like 3(YSL3) coding protein psRNATarget
NM_001035612.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:194   UUUUCUUCUUCUUCUUCUUU   213

2.5 Arabidopsis thaliana evolutionarily conserved C-terminal region 2 (ECT2), mRNA evolutionarily conserved C-terminal region 2(ECT2) coding protein psRNATarget
NM_001035613.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:170   UUUUCUUCUUCUUCUUCUUU   189

2.5 Arabidopsis thaliana evolutionarily conserved C-terminal region 2 (ECT2), mRNA evolutionarily conserved C-terminal region 2(ECT2) coding protein psRNATarget
NM_180247.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:170   UUUUCUUCUUCUUCUUCUUU   189

2.5 Arabidopsis thaliana evolutionarily conserved C-terminal region 2 (ECT2), mRNA evolutionarily conserved C-terminal region 2(ECT2) coding protein psRNATarget
NM_111660.3
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:217   UUUUCUUCUUCUUCUUCUUC   236

2.5 Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family protein mRNA RNA-binding (RRM/RBD/RNP motifs) family protein(AT3G07810) coding protein psRNATarget
AY123992.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:110   UUUUCUUCUUCUUCUUCUUU   129

2.5 Arabidopsis thaliana AT3g13460/MRP15_10 mRNA, complete cds NA coding protein psRNATarget
AK227250.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:174   UUUUCUUCUUCUUCUUCUUU   193

2.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL11-02-P19 NA coding protein psRNATarget
NM_100201.3
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:25   UUUUCUUCUUCUUCUUCUUC   44

2.5 Arabidopsis thaliana RAD3-like DNA-binding helicase protein (UVH6), mRNA RAD3-like DNA-binding helicase protein(UVH6) coding protein psRNATarget
AY062471.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:25   UUUUCUUCUUCUUCUUCUUC   44

2.5 Arabidopsis thaliana Strong similarity to nucleotide excision repair protein (At1g03190; F15K9.20) mRNA, complete cds NA coding protein psRNATarget
AY050782.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:184   UUUUCUUCUUCUUCUUCUUC   203

2.5 Arabidopsis thaliana putative RNA-binding protein (At3g07810) mRNA, complete cds NA coding protein psRNATarget
NM_127227.6
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:2140   UUUUCUUCUUCUUCUUCUUC   2159

2.5 Arabidopsis thaliana kinase with adenine nucleotide alpha hydrolases-like domain-containing protein mRNA kinase with adenine nucleotide alpha hydrolases-like domain-containing protein(AT2G16750) coding protein psRNATarget
BX824430.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:204   UUUUCUUCUUCUUCUUCUUC   223

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH48ZE06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX816845.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:14   UUUUCUUCUUCUUCUUCUUC   33

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH71ZA04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_180208.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:184   UUUUCUUCUUCUUCUUCUUC   203

2.5 Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family protein mRNA RNA-binding (RRM/RBD/RNP motifs) family protein(AT3G07810) coding protein psRNATarget
NM_112968.4
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:102   UUUUCUUCUUCUUCUUCUUC   121

2.5 Arabidopsis thaliana Ethylene insensitive 3 family protein (EIN3), mRNA Ethylene insensitive 3 family protein(EIN3) coding protein psRNATarget
NM_119377.5
ncRNA:20   AA--AAGAAGAAGAAGAAGAGU   1
  ||--||||||||||||||||||
targets:80   UUCCUUCUUCUUCUUCUUCUCA   101

2.5 Arabidopsis thaliana Protein kinase superfamily protein mRNA Protein kinase superfamily protein(AT4G32250) coding protein psRNATarget
AY069875.2
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:71   UUUUCUUCUUCUUCUUCUUC   90

2.5 Arabidopsis thaliana AT3g20770/MOE17_6 mRNA, complete cds NA coding protein psRNATarget
NM_001125014.2
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:2160   UUUUCUUCUUCUUCUUCUUC   2179

2.5 Arabidopsis thaliana Nucleotidyltransferase family protein mRNA Nucleotidyltransferase family protein(AT2G40520) coding protein psRNATarget
NM_001336842.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:2050   UUUUCUUCUUCUUCUUCUUC   2069

2.5 Arabidopsis thaliana Nucleotidyltransferase family protein mRNA Nucleotidyltransferase family protein(AT2G40520) coding protein psRNATarget
NM_001036692.1
ncRNA:20   AA--AAGAAGAAGAAGAAGAGU   1
  ||--||||||||||||||||||
targets:1   UUCCUUCUUCUUCUUCUUCUCA   22

2.5 Arabidopsis thaliana Protein kinase superfamily protein mRNA Protein kinase superfamily protein(AT4G32250) coding protein psRNATarget
NM_001335488.1
ncRNA:20   AAAAGAAGAAGAAGAAGAGU   1
  ||||||||||||||||||=*
targets:1925   UUUUCUUCUUCUUCUUCUUC   1944

2.5 Arabidopsis thaliana kinase with adenine nucleotide alpha hydrolases-like domain-containing protein mRNA kinase with adenine nucleotide alpha hydrolases-like domain-containing protein(AT2G16750) coding protein psRNATarget
NM_101950.3
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:104   UUUUCUUCUUCUUCUUCUUCA   124

3.0 Arabidopsis thaliana calponin-like domain protein mRNA calponin-like domain protein(AT1G20970) coding protein psRNATarget
NM_126243.4
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:140   UUUUCUUCUUCUUCUUCUUCA   160

3.0 Arabidopsis thaliana Leucine-rich repeat protein kinase family protein mRNA Leucine-rich repeat protein kinase family protein(AT2G01820) coding protein psRNATarget
NM_127474.4
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:115   UUUUCUUCUUCUUCUUCUUCA   135

3.0 Arabidopsis thaliana subtilisin-like serine protease 3 (SLP3), mRNA subtilisin-like serine protease 3(SLP3) coding protein psRNATarget
NM_105700.3
ncRNA:20   AA-AAGAAGAAGAAGAAGAGU   1
  ||-|||||||||||||||||=
targets:155   UUCUUCUUCUUCUUCUUCUCG   175

3.0 Arabidopsis thaliana ubiquitin-protein ligase 2 (UPL2), mRNA ubiquitin-protein ligase 2(UPL2) coding protein psRNATarget
AY051009.1
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:140   UUUUCUUCUUCUUCUUCUUCA   160

3.0 Arabidopsis thaliana putative subtilisin serine protease (At2g19170) mRNA, complete cds NA coding protein psRNATarget
BX819244.1
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:60   UUUUCUUCUUCUUCUUCUUCA   80

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB5ZE02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_103120.4
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:81   UUUUCUUCUUCUUCUUCUUCA   101

3.0 Arabidopsis thaliana Smg-4/UPF3 family protein (UPF3), mRNA Smg-4/UPF3 family protein(UPF3) coding protein psRNATarget
NM_001342289.1
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:2   UUUUCUUCUUCUUCUUCUUCA   22

3.0 Arabidopsis thaliana thymidylate synthase 2 (THY-2), mRNA thymidylate synthase 2(THY-2) coding protein psRNATarget
NM_001123934.1
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:54   UUUUCUUCUUCUUCUUCUUCA   74

3.0 Arabidopsis thaliana Smg-4/UPF3 family protein (UPF3), mRNA Smg-4/UPF3 family protein(UPF3) coding protein psRNATarget
NM_001343909.1
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:42   UUUUCUUCUUCUUCUUCUUCA   62

3.0 Arabidopsis thaliana Major facilitator superfamily protein mRNA Major facilitator superfamily protein(AT5G25040) coding protein psRNATarget
AY128383.1
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:41   UUUUCUUCUUCUUCUUCUUCA   61

3.0 Arabidopsis thaliana unknown protein (At1g33980) mRNA, complete cds NA coding protein psRNATarget
NM_001343907.1
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:68   UUUUCUUCUUCUUCUUCUUCA   88

3.0 Arabidopsis thaliana Major facilitator superfamily protein mRNA Major facilitator superfamily protein(AT5G25040) coding protein psRNATarget
NM_119623.5
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:2   UUUUCUUCUUCUUCUUCUUCA   22

3.0 Arabidopsis thaliana thymidylate synthase 2 (THY-2), mRNA thymidylate synthase 2(THY-2) coding protein psRNATarget
NM_001203461.1
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:14   UUUUCUUCUUCUUCUUCUUCA   34

3.0 Arabidopsis thaliana Major facilitator superfamily protein mRNA Major facilitator superfamily protein(AT5G25040) coding protein psRNATarget
NM_001342290.1
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:2   UUUUCUUCUUCUUCUUCUUCA   22

3.0 Arabidopsis thaliana thymidylate synthase 2 (THY-2), mRNA thymidylate synthase 2(THY-2) coding protein psRNATarget
NM_112559.4
ncRNA:20   AAAAGAAGAAGAAGAAG-AGU   1
  |||||||||||||||||-|||
targets:154   UUUUCUUCUUCUUCUUCCUCA   174

3.0 Arabidopsis thaliana Pectin lyase-like superfamily protein mRNA Pectin lyase-like superfamily protein(AT3G16850) coding protein psRNATarget
NM_122413.4
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:14   UUUUCUUCUUCUUCUUCUUCA   34

3.0 Arabidopsis thaliana Major facilitator superfamily protein mRNA Major facilitator superfamily protein(AT5G25040) coding protein psRNATarget
AY035074.1
ncRNA:20   AAAAGAAGAAGAAGAAG-AGU   1
  |||||||||||||||||-|||
targets:30   UUUUCUUCUUCUUCUUCCUCA   50

3.0 Arabidopsis thaliana putative polygalacturonase (At3g16850) mRNA, complete cds NA coding protein psRNATarget
AY085702.1
ncRNA:20   AAAAGAAGAAGAAGAAG-AGU   1
  |||||||||||||||||-|||
targets:33   UUUUCUUCUUCUUCUUCCUCA   53

3.0 Arabidopsis thaliana clone 17203 mRNA, complete sequence NA coding protein psRNATarget
NM_001343908.1
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:53   UUUUCUUCUUCUUCUUCUUCA   73

3.0 Arabidopsis thaliana Major facilitator superfamily protein partial mRNA Major facilitator superfamily protein(AT5G25040) coding protein psRNATarget
BX824720.1
ncRNA:20   AAAAGAAGAAGAAGAAG-AGU   1
  |||||||||||||||||-|||
targets:77   UUUUCUUCUUCUUCUUCCUCA   97

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH67ZG09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX823519.1
ncRNA:20   AAAAGAAGAAGAAGAAG-AGU   1
  |||||||||||||||||-|||
targets:24   UUUUCUUCUUCUUCUUCCUCA   44

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS47ZB01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX824082.1
ncRNA:20   AAAAGAAGAAGAAGAAG-AGU   1
  |||||||||||||||||-|||
targets:9   UUUUCUUCUUCUUCUUCCUCA   29

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH20ZE07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX827696.1
ncRNA:20   AAAAGAAGAAGAAGAAGA-GU   1
  ||||||||||||||||||-||
targets:48   UUUUCUUCUUCUUCUUCUUCA   68

3.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH11ZB02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AK227479.1
ncRNA:20   AAAAGAAGAAGAAGAAG-AGU   1
  |||||||||||||||||-|||
targets:171   UUUUCUUCUUCUUCUUCAUCA   191

3.0 Arabidopsis thaliana mRNA for putative cleavage and polyadenylation specifity factor, complete cds, clone: RAFL14-11-E06 NA coding protein psRNATarget
NM_001335075.1
ncRNA:20   AAAAGAAGAAGAAGAAG-AGU   1
  |||||||||||||||||-|||
targets:213   UUUUCUUCUUCUUCUUCAUCA   233

3.0 Arabidopsis thaliana RING-finger protein for embryogenesi (RIE1), mRNA RING-finger protein for embryogenesi(RIE1) coding protein psRNATarget
NM_179593.4
ncRNA:20   AAAAGAAGAAGAAGAAG-AGU   1
  |||||||||||||||||-|||
targets:213   UUUUCUUCUUCUUCUUCAUCA   233

3.0 Arabidopsis thaliana RING-finger protein for embryogenesi (RIE1), mRNA RING-finger protein for embryogenesi(RIE1) coding protein psRNATarget

Reference

1 PMID:21357774
"MicroRNA activity in the Arabidopsis male germline";
Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD;
J Exp Bot. 62:1611-1620(2011).
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