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BaseInfo

ncRNA ID novel_gma_miR947
Species Glycine max
Class miRNA
Genome position Chr2:21661230-21661305 [-]
Reference genome Glycine_max_v2.0
Source SRR1451636
Length 20
Mature sequence(if miRNA) 1 - UGAAACUCCAAUUUUGAUUU - 20
Stem-loop(if miRNA) --                     -  A     --     U
  AUUAGAAUUGGAGUUUUACCU CG UAAUC  UAGGU G
  ||||||||||||||||||||| || |||||  |||||
  UAGUUUUAACCUCAAAGUGGA GC AUUGG  AUUUA A
UU                     C  -     UA     C
Stem-loop sequence AUUAGAAUUGGAGUUUUACCUCGAUAAUCUAGGUUGACAUUUAAUGGUUACGCAGGUGAAACUCCAAUUUUGAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003554918.3
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||||||||||||||||||
targets:1545   CAAUCAAAAUUGGAGUUUCA   1564

0.0 PREDICTED: Glycine max uncharacterized LOC100811822 (LOC100811822), mRNA uncharacterized LOC100811822(LOC100811822) coding protein psRNATarget
XM_003517602.3
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||||||||||||||||||
targets:3099   CAAUCAAAAUUGGAGUUUCA   3118

0.0 PREDICTED: Glycine max disease resistance protein RPM1-like (LOC100805346), mRNA disease resistance protein RPM1-like(LOC100805346) coding protein psRNATarget
XM_014770913.1
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||||*|||||||||||||
targets:1530   CAAUCAUAAUUGGAGUUUCA   1549

1.0 PREDICTED: Glycine max mitochondrial import inner membrane translocase subunit TIM22-3-like (LOC100812694), mRNA mitochondrial import inner membrane translocase subunit TIM22-3-like(LOC100812694) coding protein psRNATarget
XM_003527961.3
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  ||||||||||||||||||*|
targets:54   AAAUCAAAAUUGGAGUUUGA   73

1.5 PREDICTED: Glycine max inositol-pentakisphosphate 2-kinase-like (LOC100782468), transcript variant X6, mRNA inositol-pentakisphosphate 2-kinase-like(LOC100782468) coding protein psRNATarget
XM_006581136.2
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  ||||||||||||||||||*|
targets:54   AAAUCAAAAUUGGAGUUUGA   73

1.5 PREDICTED: Glycine max inositol-pentakisphosphate 2-kinase-like (LOC100782468), transcript variant X7, mRNA inositol-pentakisphosphate 2-kinase-like(LOC100782468) coding protein psRNATarget
AK285528.1
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||||||||||*|||||||
targets:1931   UAAUCAAAAUUGAAGUUUCA   1950

1.5 Glycine max cDNA, clone: GMFL01-10-P20 NA coding protein psRNATarget
XM_003524477.3
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||||||||||*|||||||
targets:1941   UAAUCAAAAUUGAAGUUUCA   1960

1.5 PREDICTED: Glycine max 3-ketoacyl-CoA synthase 11-like (LOC100817884), mRNA 3-ketoacyl-CoA synthase 11-like(LOC100817884) coding protein psRNATarget
XM_006592415.2
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||||||*|||||||||||
targets:723   UAAUCAAAUUUGGAGUUUCA   742

1.5 PREDICTED: Glycine max TMV resistance protein N-like (LOC100819678), transcript variant X7, mRNA TMV resistance protein N-like(LOC100819678) coding protein psRNATarget
XM_006585459.2
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *=||||=|||||||||||||
targets:183   CGAUCAGAAUUGGAGUUUCA   202

2.0 PREDICTED: Glycine max phospholipase D alpha 4-like (LOC100812642), transcript variant X3, mRNA phospholipase D alpha 4-like(LOC100812642) coding protein psRNATarget
XM_003544018.3
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  **||||=|||||||||||||
targets:1173   CUAUCAGAAUUGGAGUUUCA   1192

2.0 PREDICTED: Glycine max LOB domain-containing protein 21-like (LOC100777635), mRNA LOB domain-containing protein 21-like(LOC100777635) coding protein psRNATarget
AK287327.1
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||||=|=|||||||||||
targets:742   CAAUCAGAGUUGGAGUUUCA   761

2.5 Glycine max cDNA, clone: GMFL01-49-O18 NA coding protein psRNATarget
XM_003551091.2
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||=|||||||||||||=|
targets:1217   UAAUUAAAAUUGGAGUUUUA   1236

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor TINY-like (LOC100816404), mRNA ethylene-responsive transcription factor TINY-like(LOC100816404) coding protein psRNATarget
XM_006587557.2
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||||=|=|||||||||||
targets:3721   CAAUCAGAGUUGGAGUUUCA   3740

2.5 PREDICTED: Glycine max disease resistance protein RPM1-like (LOC100817624), mRNA disease resistance protein RPM1-like(LOC100817624) coding protein psRNATarget
XM_006585935.2
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||||||||||||||||=*
targets:437   CAAUCAAAAUUGGAGUUUUC   456

2.5 PREDICTED: Glycine max mucin-21-like (LOC100790656), transcript variant X3, mRNA mucin-21-like(LOC100790656) coding protein psRNATarget
XM_006585934.2
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||||||||||||||||=*
targets:437   CAAUCAAAAUUGGAGUUUUC   456

2.5 PREDICTED: Glycine max mucin-21-like (LOC100790656), transcript variant X2, mRNA mucin-21-like(LOC100790656) coding protein psRNATarget
XM_014767498.1
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||||=||||*||||||||
targets:653   CAAUCAGAAUUAGAGUUUCA   672

2.5 PREDICTED: Glycine max uncharacterized LOC102659579 (LOC102659579), mRNA uncharacterized LOC102659579(LOC102659579) coding protein psRNATarget
XM_006590583.2
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||||=|||||*|||||||
targets:1152   CAAUCAGAAUUGAAGUUUCA   1171

2.5 PREDICTED: Glycine max cyclin-D3-3-like (LOC100807175), transcript variant X2, mRNA cyclin-D3-3-like(LOC100807175) coding protein psRNATarget
XM_003538758.3
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||||=|||||*|||||||
targets:1185   CAAUCAGAAUUGAAGUUUCA   1204

2.5 PREDICTED: Glycine max cyclin-D3-3-like (LOC100807175), transcript variant X1, mRNA cyclin-D3-3-like(LOC100807175) coding protein psRNATarget
AK245707.1
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||=|||||||*|||||||
targets:939   CAAUUAAAAUUGAAGUUUCA   958

2.5 Glycine max cDNA, clone: GMFL01-38-N13 NA coding protein psRNATarget
XM_003516562.3
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||||=|||||*|||||||
targets:1260   CAAUCAGAAUUGAAGUUUCA   1279

2.5 PREDICTED: Glycine max cyclin-D3-2-like (LOC100802683), mRNA cyclin-D3-2-like(LOC100802683) coding protein psRNATarget
XM_006602543.2
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *|||||=|||||||||||*|
targets:2209   UAAUCAGAAUUGGAGUUUAA   2228

2.5 PREDICTED: Glycine max BAG family molecular chaperone regulator 6-like (LOC100785407), mRNA BAG family molecular chaperone regulator 6-like(LOC100785407) coding protein psRNATarget
BT093223.1
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *=||=|=|||||||||||||
targets:811   UGAUUAGAAUUGGAGUUUCA   830

3.0 Soybean clone JCVI-FLGm-14A13 unknown mRNA NA coding protein psRNATarget
NM_001317476.2
ncRNA:20   UUUAGUUUUAACCUCAAAGU   1
  *=||=|=|||||||||||||
targets:890   UGAUUAGAAUUGGAGUUUCA   909

3.0 Glycine max uncharacterized LOC100800312 (LOC100800312), mRNA uncharacterized LOC100800312(LOC100800312) coding protein psRNATarget
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