Search result

BaseInfo

ncRNA ID	novel_gma_miR945
Species	Glycine max
Class	miRNA
Genome position	Chr11:15054835-15054926 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451636
Length	24
Mature sequence(if miRNA)	69 - AGAGAACCGUCUUAGAAUGUAUUU - 92
Stem-loop(if miRNA)	-AUAU            AA    AGUU             A    G      CAUUCUAAGACG  UCUU    AAAAAUUGUCUUA AAGG U      ||||||||||||  ||||    ||||||||||||| |||| A      GUAAGAUUCUGC  AGAG    UUUUUAGCAGAAU UUUC C UUUAU            CA    --AU             C    A
Stem-loop sequence	AUAUCAUUCUAAGACGAAUCUUAGUUAAAAAUUGUCUUAAAAGGGUACACUUUCUAAGACGAUUUUUUAGAGAACCGUCUUAGAAUGUAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014771087.1	ncRNA:24   UUUAUGUAAGAUUCUGCCAAGAGA   1   |||||||||||||||||||||||| targets:2605   AAAUACAUUCUAAGACGGUUCUCU   2628 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC102664939 (LOC102664939), transcript variant X2, mRNA	uncharacterized LOC102664939(LOC102664939)	coding protein	psRNATarget
XM_014771087.1	ncRNA:24   UUUAUGUAAGAUUCUGCCAAGAGA   1   |||*||||||||||||||||||=| targets:2509   AAACACAUUCUAAGACGGUUCUUU   2532 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102664939 (LOC102664939), transcript variant X2, mRNA	uncharacterized LOC102664939(LOC102664939)	coding protein	psRNATarget
XM_014763138.1	ncRNA:24   UUUAUGUAAGAUUCUGCCAAGAGA   1   |||||||||||||||=|||||||| targets:1523   AAAUACAUUCUAAGAUGGUUCUCU   1546 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X3, mRNA	uncharacterized LOC100806242(LOC100806242)	coding protein	psRNATarget
XM_006589010.2	ncRNA:24   UUUAUGUAAGAUUCUGCCAAGAGA   1   |||||||||||||||=|||||||| targets:2232   AAAUACAUUCUAAGAUGGUUCUCU   2255 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X2, mRNA	uncharacterized LOC100806242(LOC100806242)	coding protein	psRNATarget
XM_003535430.3	ncRNA:24   UUUA-UGUAAGAUUCUGCCAAGAGA   1   ==||-||||**|||||||||||||* targets:1554   GGAUGACAUGAUAAGACGGUUCUCG   1578 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100818182 (LOC100818182), mRNA	uncharacterized LOC100818182(LOC100818182)	coding protein	psRNATarget