ncRNA ID | bra-miR9564-5p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA5:12733419-12733651 [-] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 121 - ACAAAACGAUUACACAGCUCGGUC - 144 |
Stem-loop(if miRNA) |
UUU                                                                                                                 A    CCGAAAACAUUUCGGAAGGAUAAAACUUGUUCUCCCAAAAAAACCGCUGAAAAACCCCUACGUUAAUCGCGGAAAAAGGAAACACAACAAAACGAUUACACAGCUCGGUCGCU C    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    GGCUUUUGUAAAGCCUUCCUAUUUUGAACAAGAGGGUUUUUUUGGCGACUUUUUGGGGAUGCAAUUAGCGCCUUUUUCCUUUGUGUUGUUUUGCUAAUGUGUCGAGCCAGCGA G ---                                                                                                                 U |
Stem-loop sequence | UUUCCGAAAACAUUUCGGAAGGAUAAAACUUGUUCUCCCAAAAAAACCGCUGAAAAACCCCUACGUUAAUCGCGGAAAAAGGAAACACAACAAAACGAUUACACAGCUCGGUCGCUACGUAGCGACCGAGCUGUGUAAUCGUUUUGUUGUGUUUCCUUUUUCCGCGAUUAACGUAGGGGUUUUUCAGCGGUUUUUUUGGGAGAACAAGUUUUAUCCUUCCGAAAUGUUUUCGG |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |