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BaseInfo

ncRNA ID	novel_gma_miR940
Species	Glycine max
Class	miRNA
Genome position	Chr20:22371457-22371670 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451636
Length	24
Mature sequence(if miRNA)	191 - CAGAUUUUUUCAGUUGAUGUUGAC - 214
Stem-loop(if miRNA)	--    UUU  UC   UG     GAC   U  UUU      C      UG      UUUU  C   CA              UAUU       C              U   CAGA   UU  AGU  AUGUU   CAA GA   UUUUGG UGACGU  GCUAGG    UC AGU  ACAUCAGCCAAAAC    UUUUAGC AAUAUCGGCUAGGG U   ||||   ||  |||  |||||   ||| ||   |||||| ||||||  ||||||    || |||  ||||||||||||||    ||||||| |||||||||||||| A   GUCU   GG  UCA  UACAG   GUU UU   AGGAUU GCUGCA  CGAUUC    AG UCA  UGUAGUCGGUUUUG    GGGGUUG UUGUAGCCGAUUUU U CG    UUU  GA   GU     -UC   U  -UU      A      GU      UUUU  A   AC              ---U       A              U
Stem-loop sequence	CAGAUUUUUUCAGUUGAUGUUGACCAAUGAUUUUUUUGGCUGACGUUGGCUAGGUUUUUCCAGUCAACAUCAGCCAAAACUAUUUUUUAGCCAAUAUCGGCUAGGGUUAUUUUUUAGCCGAUGUUAGUUGGGGUGUUUUGGCUGAUGUCAACUAGAUUUUCUUAGCUGACGUCGAUUAGGAUUUUUUUGCUGACAUUGACUAGGGUUUUCUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK286493.1	ncRNA:24   CAGUUGUAGUUGACUUUUUUAGAC   1   **||||||||||||||||||*||* targets:660   AACAACAUCAACUGAAAAAAACUA   683 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-29-N20	NA	coding protein	psRNATarget
XM_003525896.3	ncRNA:24   CAGUUGUAGUUGACUUUUUUAGAC   1   **||||||||||||||||||*||* targets:714   AACAACAUCAACUGAAAAAAACUA   737 Target Full Sequence	2.5	PREDICTED: Glycine max serine carboxypeptidase-like 11 (LOC100801015), transcript variant X4, mRNA	serine carboxypeptidase-like 11(LOC100801015)	coding protein	psRNATarget
XM_006581215.2	ncRNA:24   CAGUUGUAGUUGACUUUUUUAGAC   1   **||||||||||||||||||*||* targets:715   AACAACAUCAACUGAAAAAAACUA   738 Target Full Sequence	2.5	PREDICTED: Glycine max serine carboxypeptidase-like 11 (LOC100801015), transcript variant X3, mRNA	serine carboxypeptidase-like 11(LOC100801015)	coding protein	psRNATarget
XM_006581213.2	ncRNA:24   CAGUUGUAGUUGACUUUUUUAGAC   1   **||||||||||||||||||*||* targets:713   AACAACAUCAACUGAAAAAAACUA   736 Target Full Sequence	2.5	PREDICTED: Glycine max serine carboxypeptidase-like 11 (LOC100801015), transcript variant X1, mRNA	serine carboxypeptidase-like 11(LOC100801015)	coding protein	psRNATarget
XM_014769145.1	ncRNA:24   CAGUUGUAGUUGACUUUUUUAGAC   1   **||*=|||||||||||||=|||| targets:91   UGCAUUAUCAACUGAAAAAGUCUG   114 Target Full Sequence	2.5	PREDICTED: Glycine max ribonuclease E/G-like protein, chloroplastic (LOC100795436), transcript variant X3, mRNA	ribonuclease E/G-like protein, chloroplastic(LOC100795436)	coding protein	psRNATarget