Search result

BaseInfo

ncRNA ID novel_gma_miR922
Species Glycine max
Class miRNA
Genome position Chr18:6437278-6437363 [+]
Reference genome Glycine_max_v2.0
Source SRR1451636;SRR1451638;SRR1451642;SRR1451648;SRR1451616
Length 22
Mature sequence(if miRNA) 1 - CUUCCGGAUGAACAAUUUGUUC - 22
Stem-loop(if miRNA) --       AU      U      UA      A         C
  CUUCCGG  GAACAA UUGUUC  CCGGAA AACCUUCUU C
  |||||||  |||||| ||||||  |||||| |||||||||
  GAAGGCC  CUUGUU AACAAG  GGCUUU UUGGAAGAA G
AA       AU      U      UA      C         G
Stem-loop sequence CUUCCGGAUGAACAAUUUGUUCUACCGGAAAAACCUUCUUCCGGAAGAAGGUUCUUUCGGAUGAACAAUUUGUUCUACCGGAAGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006588641.2
ncRNA:22   CUUGUUUAACAAGUAGGCCUUC   1
  |||*||*||||||||||||||*
targets:162   GAAGAACUUGUUCAUCCGGAAA   183

3.0 PREDICTED: Glycine max uncharacterized LOC102667717 (LOC102667717), transcript variant X1, mRNA uncharacterized LOC102667717(LOC102667717) coding protein psRNATarget
XM_006588642.2
ncRNA:22   CUUGUUUAACAAGUAGGCCUUC   1
  |||*||*||||||||||||||*
targets:173   GAAGAACUUGUUCAUCCGGAAA   194

3.0 PREDICTED: Glycine max uncharacterized LOC102667717 (LOC102667717), transcript variant X2, mRNA uncharacterized LOC102667717(LOC102667717) coding protein psRNATarget