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BaseInfo

ncRNA ID bra-miR161-3p
Species Brassica rapa
Class miRNA
Genome position chrA5:12400028-12400158 [-]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 9 - GUCACUUUCAAUGCGUUGAUC - 29
Stem-loop(if miRNA) UUUAU    UC          C                  -CAUUU       --A  UUUCGCUCU
     UGCU  GAUCAAUGCA UGAAAGUGACUACAUCAG      GUUUUUA   GC         C
     ||||  |||||||||| ||||||||||||||||||      |||||||   ||         A
     ACGA  CUAGUUGCGU ACUUUCACUGAUGUAGUC      UAAAAGU   AG         U
---GU    UA          A                  UCCGAU       AGA  UAGUAUAUC
Stem-loop sequence UUUAUUGCUUCGAUCAAUGCACUGAAAGUGACUACAUCAGCAUUUGUUUUUAAGCUUUCGCUCUCAUCUAUAUGAUGAAGAUGAAAAUUAGCCUCUGAUGUAGUCACUUUCAAUGCGUUGAUCAUAGCAUG

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).