ncRNA ID | bra-miR161-3p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA5:12400028-12400158 [-] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 9 - GUCACUUUCAAUGCGUUGAUC - 29 |
Stem-loop(if miRNA) |
UUUAU    UC          C                  -CAUUU       --A  UUUCGCUCU      UGCU  GAUCAAUGCA UGAAAGUGACUACAUCAG      GUUUUUA   GC         C      ||||  |||||||||| ||||||||||||||||||      |||||||   ||         A      ACGA  CUAGUUGCGU ACUUUCACUGAUGUAGUC      UAAAAGU   AG         U ---GU    UA          A                  UCCGAU       AGA  UAGUAUAUC |
Stem-loop sequence | UUUAUUGCUUCGAUCAAUGCACUGAAAGUGACUACAUCAGCAUUUGUUUUUAAGCUUUCGCUCUCAUCUAUAUGAUGAAGAUGAAAAUUAGCCUCUGAUGUAGUCACUUUCAAUGCGUUGAUCAUAGCAUG |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |