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BaseInfo

ncRNA ID novel_gma_miR907
Species Glycine max
Class miRNA
Genome position Chr16:13953319-13953411 [+]
Reference genome Glycine_max_v2.0
Source SRR1451636
Length 24
Mature sequence(if miRNA) 1 - AAUUAUUUAUCAUUUAAAUGGGCU - 24
Stem-loop(if miRNA) -AAU      U     -AA      U    G  U     --U     C
    UAUUUA CAUUU   AUGGGC AAUU AC CAAGA   AUCAC A
    |||||| |||||   |||||| |||| || |||||   |||||
    GUAAAU GUAAA   UACUUG UUAG UG GUUCU   UAGUG A
AGUU      U     GAG      -    A  U     CUC     A
Stem-loop sequence AAUUAUUUAUCAUUUAAAUGGGCUAAUUGACUCAAGAUAUCACCAAAGUGAUCUCUCUUGUGUAGAUUGUUCAUGAGAAAUGUUAAAUGUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006585156.2
ncRNA:24   UCGGGUAAAUUUACUAUUUAUUAA   1
  |*=||*||||||||||||||||||
targets:2365   ACUCCUUUUAAAUGAUAAAUAAUU   2388

1.0 PREDICTED: Glycine max transmembrane 9 superfamily member 1-like (LOC100787300), transcript variant X2, mRNA transmembrane 9 superfamily member 1-like(LOC100787300) coding protein psRNATarget
XM_003531250.3
ncRNA:24   UCGGGUAAAUUUACUAUUUAUUAA   1
  |*=||*||||||||||||||||||
targets:2369   ACUCCUUUUAAAUGAUAAAUAAUU   2392

1.0 PREDICTED: Glycine max transmembrane 9 superfamily member 1-like (LOC100787300), transcript variant X1, mRNA transmembrane 9 superfamily member 1-like(LOC100787300) coding protein psRNATarget
XM_006586081.2
ncRNA:24   UCGGGUAAAUUUACUAUUUAUUAA   1
  =|*|||**||||||||||||||||
targets:843   GGACCAGAUAAAUGAUAAAUAAUU   866

2.0 PREDICTED: Glycine max transmembrane emp24 domain-containing protein p24beta2-like (LOC102665223), mRNA transmembrane emp24 domain-containing protein p24beta2-like(LOC102665223) coding protein psRNATarget
XM_003552945.3
ncRNA:24   UCGGGUAAAUUUACUAUUUAUUAA   1
  =|*|||**||||||||||||||||
targets:1114   GGACCAAAUAAAUGAUAAAUAAUU   1137

2.0 PREDICTED: Glycine max transmembrane emp24 domain-containing protein p24beta2-like (LOC100807684), mRNA transmembrane emp24 domain-containing protein p24beta2-like(LOC100807684) coding protein psRNATarget
AK244758.1
ncRNA:24   UCGGGUAAAU-UUACUAUUUAUUAA   1
  =**=*|||||-=|||||||||||||
targets:1125   GUAUGAUUUAUGAUGAUAAAUAAUU   1149

3.0 Glycine max cDNA, clone: GMFL01-13-D08 NA coding protein psRNATarget