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BaseInfo

ncRNA ID	bra-miR161-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA5:12400028-12400158 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	98 - UCAAUGCACUGAAAGUGACUA - 118
Stem-loop(if miRNA)	UUUAU    UC          C                  -CAUUU       --A  UUUCGCUCU      UGCU  GAUCAAUGCA UGAAAGUGACUACAUCAG      GUUUUUA   GC         C      ||||  |||||||||| ||||||||||||||||||      |||||||   ||         A      ACGA  CUAGUUGCGU ACUUUCACUGAUGUAGUC      UAAAAGU   AG         U ---GU    UA          A                  UCCGAU       AGA  UAGUAUAUC
Stem-loop sequence	UUUAUUGCUUCGAUCAAUGCACUGAAAGUGACUACAUCAGCAUUUGUUUUUAAGCUUUCGCUCUCAUCUAUAUGAUGAAGAUGAAAAUUAGCCUCUGAUGUAGUCACUUUCAAUGCGUUGAUCAUAGCAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009119788.2	ncRNA:21   AUCAGUGAAAGUCACGUAACU   1   |*||||||||||||||*|||| targets:1173   UUGUCACUUUCAGUGCUUUGA   1193 Target Full Sequence	1.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At1g12620-like (LOC103843088), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g12620-like(LOC103843088)	coding protein	psRNATarget
XM_018654909.1	ncRNA:21   AUCAGUGAAAGUCACGUAACU   1   |*||||||||||||||*|||| targets:1173   UUGUCACUUUCAGUGCUUUGA   1193 Target Full Sequence	1.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At1g12620-like (LOC103843088), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_009119789.2	ncRNA:21   AUCAGUGAAAGUCACGUAACU   1   |*||||||||||||||*|||| targets:1173   UUGUCACUUUCAGUGCUUUGA   1193 Target Full Sequence	1.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At1g12620-like (LOC103843088), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g12620-like(LOC103843088)	coding protein	psRNATarget
XM_009136193.1	ncRNA:21   AUCAGUGAAAGUCACGUAACU   1   ||||||*|||=|||||||||| targets:1437   UAGUCAAUUUUAGUGCAUUGA   1457 Target Full Sequence	2.5	PREDICTED: Brassica rapa probable cyclic nucleotide-gated ion channel 12 (LOC103858772), mRNA	probable cyclic nucleotide-gated ion channel 12(LOC103858772)	coding protein	psRNATarget
XM_009109617.1	ncRNA:21   AUCAGUGAAAGUCACGUAACU   1   |**|||||||||||||*|||| targets:971   UCAUCACUUUCAGUGCUUUGA   991 Target Full Sequence	2.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC103833524), mRNA	pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like(LOC103833524)	coding protein	psRNATarget
XM_009112378.2	ncRNA:21   AUCAGUGAAAGUCACGUAACU   1   |*|||||*||||||||*|||| targets:1058   UCGUCACGUUCAGUGCCUUGA   1078 Target Full Sequence	2.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like (LOC103836144), mRNA	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like(LOC103836144)	coding protein	psRNATarget
XM_009124090.2	ncRNA:21   AUCAGU-GAAAGUCACGUAACU   1   ***|||-||||||||||||||| targets:193   AUCUCAGCUUUCAGUGCAUUGA   214 Target Full Sequence	3.0	PREDICTED: Brassica rapa cyclin-U4-2 (LOC103847057), mRNA	cyclin-U4-2(LOC103847057)	coding protein	psRNATarget
XM_009134433.2	ncRNA:21   AUCAGUGAAAGUCACGUAACU   1   *||*||*|||||||||||||* targets:658   GAGACAGUUUCAGUGCAUUGU   678 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103857257 (LOC103857257), mRNA	uncharacterized LOC103857257(LOC103857257)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).