| ncRNA ID | bra-miR160a-3p |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA5:3222211-3222337 [-] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 22 - GCGUAUGAGGAGCCAUGCAUA - 42 |
| Stem-loop(if miRNA) |
UA U A UGU C CU C U UA C UGUGUAG UGUAUA GA GUAUGC UGGCUCC GUAUGCCAU C C AG UCAUCGAC ||||||| |||||| || |||||| ||||||| ||||||||| | | || |||||||C AUACAUU ACAUAU CU UAUACG ACCGAGG UAUGCGGUA G G UC AGUAGUUA -C U A -UU U AG A U CC C |
| Stem-loop sequence | UAUGUGUAGUUGUAUAAGAUGUGUAUGCCUGGCUCCCUGUAUGCCAUCCUCUAAGCUCAUCGACCAUUGAUGACCUCCGUGAAUGGCGUAUGAGGAGCCAUGCAUAUUUUCAUAUACAUUUACAUAC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009130863.1 |
|
2.5 | PREDICTED: Brassica rapa uncharacterized LOC103853970 (LOC103853970), mRNA | uncharacterized LOC103853970(LOC103853970) | coding protein | psRNATarget | |||||||||
| XM_018654677.1 |
|
2.5 | PREDICTED: Brassica rapa monosaccharide-sensing protein 3 (LOC103841076), transcript variant X3, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_018654676.1 |
|
2.5 | PREDICTED: Brassica rapa monosaccharide-sensing protein 3 (LOC103841076), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_009117589.2 |
|
2.5 | PREDICTED: Brassica rapa monosaccharide-sensing protein 3 (LOC103841076), transcript variant X1, mRNA | monosaccharide-sensing protein 3(LOC103841076) | coding protein | psRNATarget |
| 1 | PMID:18558089
"Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"; He XF, Fang YY, Feng L, Guo HS; FEBS Lett. 582:2445-2452(2008). |