Search result

BaseInfo

ncRNA ID	novel_gma_miR890
Species	Glycine max
Class	miRNA
Genome position	Chr13:32351489-32351637 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451636
Length	22
Mature sequence(if miRNA)	1 - UUAUUAGUAUUCUGCAUCUCCU - 22
Stem-loop(if miRNA)	--       U    U            GG    G    U          GA      U    G   CAA   GGG   UUAUUAG AUUC GCAUCUCCUAUU  AUUU AGAA GUUCAUUUCG  AUGGAC UUCU AAA   AAU   A   ||||||| |||| ||||||||||||  |||| |||| ||||||||||  |||||| |||| |||   |||   GAUAGUU UAGG CGUGGAGGGUAA  UAAA UCUU CAGGUAAGGC  UACUUG AAGA UUU   UUA   G GU       -    U            AA    A    U          UC      U    G   AGG   GUG
Stem-loop sequence	UUAUUAGUAUUCUGCAUCUCCUAUUGGAUUUGAGAAUGUUCAUUUCGGAAUGGACUUUCUGAAACAAAAUGGGAGGUGAUUGGAUUUGAGAAUGUUCAUCUCGGAAUGGACUUUCUAAAAUAAAAUGGGAGGUGCUGGAUUUGAUAGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014775736.1	ncRNA:22   UCCUCUACGUCUUAUGAUUAUU   1   |*|||||||||||*|||||||* targets:3296   AUGAGAUGCAGAAAACUAAUAC   3317 Target Full Sequence	2.5	PREDICTED: Glycine max cytochrome b561, DM13 and DOMON domain-containing protein At5g54830-like (LOC100785641), transcript variant X2, mRNA	cytochrome b561, DM13 and DOMON domain-containing protein At5g54830-like(LOC100785641)	coding protein	psRNATarget
XM_014775737.1	ncRNA:22   UCCUCUACGUCUUAUGAUUAUU   1   |*|||||||||||*|||||||* targets:3297   AUGAGAUGCAGAAAACUAAUAC   3318 Target Full Sequence	2.5	PREDICTED: Glycine max cytochrome b561, DM13 and DOMON domain-containing protein At5g54830-like (LOC100785641), transcript variant X3, mRNA	cytochrome b561, DM13 and DOMON domain-containing protein At5g54830-like(LOC100785641)	coding protein	psRNATarget
XM_014775738.1	ncRNA:22   UCCUCUACGUCUUAUGAUUAUU   1   |*|||||||||||*|||||||* targets:3297   AUGAGAUGCAGAAAACUAAUAC   3318 Target Full Sequence	2.5	PREDICTED: Glycine max cytochrome b561, DM13 and DOMON domain-containing protein At5g54830-like (LOC100785641), transcript variant X4, mRNA	cytochrome b561, DM13 and DOMON domain-containing protein At5g54830-like(LOC100785641)	coding protein	psRNATarget
XM_006585782.2	ncRNA:22   UCCUCUA-CGUCUUAUGAUUAUU   1   |*|||=|-||||||||||||||| targets:1055   AAGAGGUAGCAGAAUACUAAUAA   1077 Target Full Sequence	3.0	PREDICTED: Glycine max putative disease resistance RPP13-like protein 3 (LOC100801950), transcript variant X1, mRNA	putative disease resistance RPP13-like protein 3(LOC100801950)	coding protein	psRNATarget