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BaseInfo

ncRNA ID	bra-miR160a-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA5:3222211-3222337 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	82 - UGCCUGGCUCCCUGUAUGCCA - 102
Stem-loop(if miRNA)	UA       U      A  UGU      C       CU         C U UA  C          UGUGUAG UGUAUA GA   GUAUGC UGGCUCC  GUAUGCCAU C C  AG UCAUCGAC   ||||||| |||||| ||   |||||| |||||||  ||||||||| | |  || |||||||C   AUACAUU ACAUAU CU   UAUACG ACCGAGG  UAUGCGGUA G G  UC AGUAGUUA -C       U      A  -UU      U       AG         A U CC  C
Stem-loop sequence	UAUGUGUAGUUGUAUAAGAUGUGUAUGCCUGGCUCCCUGUAUGCCAUCCUCUAAGCUCAUCGACCAUUGAUGACCUCCGUGAAUGGCGUAUGAGGAGCCAUGCAUAUUUUCAUAUACAUUUACAUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009108179.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1379   UGGCAUGCAGGGAGCCAGGCA   1399 Target Full Sequence	1.0	PREDICTED: Brassica rapa auxin response factor 17 (ARF17-2), mRNA	auxin response factor 17(ARF17-2)	coding protein	psRNATarget
XM_009106351.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1348   UGGCAUGCAGGGAGCCAGGCA   1368 Target Full Sequence	1.0	PREDICTED: Brassica rapa auxin response factor 17 (ARF17-1), mRNA	auxin response factor 17(ARF17-1)	coding protein	psRNATarget
JN979480.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1257   UGGCAUGCAGGGAGCCAGGCA   1277 Target Full Sequence	1.0	Brassica rapa subsp. pekinensis auxin response factor 17-2 (ARF17-2) mRNA, complete cds	NA	coding protein	psRNATarget
JN979479.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1239   UGGCAUGCAGGGAGCCAGGCA   1259 Target Full Sequence	1.0	Brassica rapa subsp. pekinensis auxin response factor 17-1 (ARF17-1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_009105430.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||*||||||||||||||||| targets:1523   GGGAAUACAGGGAGCCAGGCA   1543 Target Full Sequence	1.0	PREDICTED: Brassica rapa auxin response factor 10 (ARF10), transcript variant X1, mRNA	auxin response factor 10(ARF10)	coding protein	psRNATarget
XM_009105431.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||*||||||||||||||||| targets:1436   GGGAAUACAGGGAGCCAGGCA   1456 Target Full Sequence	1.0	PREDICTED: Brassica rapa auxin response factor 10 (ARF10), transcript variant X2, mRNA	auxin response factor 10(ARF10)	coding protein	psRNATarget
JN979475.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||*||||||||||||||||| targets:1353   GGGAAUACAGGGAGCCAGGCA   1373 Target Full Sequence	1.0	Brassica rapa subsp. pekinensis auxin response factor 10 (ARF10) mRNA, complete cds	NA	coding protein	psRNATarget
XM_009139640.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||=*|||||||||||||||| targets:1523   GGGUUUACAGGGAGCCAGGCA   1543 Target Full Sequence	2.0	PREDICTED: Brassica rapa auxin response factor 16 (ARF16-2), mRNA	auxin response factor 16(ARF16-2)	coding protein	psRNATarget
XM_009129881.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||=*|||||||||||||||| targets:1535   GGGUUUACAGGGAGCCAGGCA   1555 Target Full Sequence	2.0	PREDICTED: Brassica rapa auxin response factor 16 (ARF16-1), mRNA	auxin response factor 16(ARF16-1)	coding protein	psRNATarget
JN979478.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||=*|||||||||||||||| targets:1440   GGGUUUACAGGGAGCCAGGCA   1460 Target Full Sequence	2.0	Brassica rapa subsp. pekinensis auxin response factor 16-2 (ARF16-2) mRNA, complete cds	NA	coding protein	psRNATarget
JN979477.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||=*|||||||||||||||| targets:1296   GGGUUUACAGGGAGCCAGGCA   1316 Target Full Sequence	2.0	Brassica rapa subsp. pekinensis auxin response factor 16-1 (ARF16-1) mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:18558089 "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"; He XF, Fang YY, Feng L, Guo HS; FEBS Lett. 582:2445-2452(2008).