ncRNA ID | bra-miR408-3p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA5:364768-364935 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 121 - UGCUUGUUCCCUGUCUCUCUC - 141 |
Stem-loop(if miRNA) |
UGAAA     GAAAAAAAA   G     AUA A  GA        C       G      U       AA   -----      CAUA   A      GGAGA         AGA AAGGG   G AA  GGAGGGAG CAGGGAA AGGCAG GCAUGGG  GAG     ACCAAA    GUC U      |||||         ||| |||||   | ||  |||||||| ||||||| |||||| |||||||  |||     ||||||    |||      CUUCU         UCU UUUUC   C UU  UCUCUCUC GUCCCUU UUCGUC CGUACCU  CUC     UGGUUU    UAG U -UUUA     ---------   G     -AC A  AG        U       G      U       AA   AAAAA      --UG   U |
Stem-loop sequence | UGAAAGGAGAGAAAAAAAAAGAGAAGGGAUAGAAAGAGGAGGGAGCCAGGGAAGAGGCAGUGCAUGGGAAGAGACCAAACAUAGUCAUUUGAUGUUUUGGUAAAAACUCAAUCCAUGCUCUGCUUGUUCCCUGUCUCUCUCUGAUUACCACUUUUGUCUUCUUCAUUU |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |