Search result

BaseInfo

ncRNA ID bra-miR408-5p
Species Brassica rapa
Class miRNA
Genome position chrA5:364768-364935 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 41 - GGGAGCCAGGGAAGAGGCAGU - 61
Stem-loop(if miRNA) UGAAA     GAAAAAAAA   G     AUA A  GA        C       G      U       AA   -----      CAUA   A
     GGAGA         AGA AAGGG   G AA  GGAGGGAG CAGGGAA AGGCAG GCAUGGG  GAG     ACCAAA    GUC U
     |||||         ||| |||||   | ||  |||||||| ||||||| |||||| |||||||  |||     ||||||    |||
     CUUCU         UCU UUUUC   C UU  UCUCUCUC GUCCCUU UUCGUC CGUACCU  CUC     UGGUUU    UAG U
-UUUA     ---------   G     -AC A  AG        U       G      U       AA   AAAAA      --UG   U
Stem-loop sequence UGAAAGGAGAGAAAAAAAAAGAGAAGGGAUAGAAAGAGGAGGGAGCCAGGGAAGAGGCAGUGCAUGGGAAGAGACCAAACAUAGUCAUUUGAUGUUUUGGUAAAAACUCAAUCCAUGCUCUGCUUGUUCCCUGUCUCUCUCUGAUUACCACUUUUGUCUUCUUCAUUU

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).