Search result

BaseInfo

ncRNA ID	novel_gma_miR863
Species	Glycine max
Class	miRNA
Genome position	Chr10:10565272-10565320 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451635;SRR1451648
Length	19
Mature sequence(if miRNA)	1 - GAUAGAAACUAAGAAAAUA - 19
Stem-loop(if miRNA)	--                    AA   UUUUCUUAGUUUCUAUUUAA  A   ||||||||||||||||||||  A   AAAAGAAUCAAAGAUAGGUU  A AU                    AU
Stem-loop sequence	UUUUCUUAGUUUCUAUUUAAAAAAAUAUUGGAUAGAAACUAAGAAAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003554290.3	ncRNA:19   AUAAAAGAAUCAAAGAUAG   1   |*||*|||||||||||||| targets:146   UCUUAUCUUAGUUUCUAUC   164 Target Full Sequence	2.0	PREDICTED: Glycine max ankyrin repeat-containing protein At5g02620-like (LOC100787392), mRNA	ankyrin repeat-containing protein At5g02620-like(LOC100787392)	coding protein	psRNATarget
XM_003542441.3	ncRNA:19   AUAAAAGAAUCAAAGAUAG   1   **||||||||||||||||= targets:1707   CCUUUUCUUAGUUUCUAUU   1725 Target Full Sequence	3.0	PREDICTED: Glycine max serine/threonine-protein kinase CDL1 (LOC100776041), mRNA	serine/threonine-protein kinase CDL1(LOC100776041)	coding protein	psRNATarget
XM_014774080.1	ncRNA:19   AUAAAAGAAUCAAAGAUAG   1   *||||*||||||||||||= targets:90   CAUUUACUUAGUUUCUAUU   108 Target Full Sequence	3.0	PREDICTED: Glycine max serine/threonine-protein kinase prpf4B-like (LOC100814081), transcript variant X1, mRNA	serine/threonine-protein kinase prpf4B-like(LOC100814081)	coding protein	psRNATarget
XM_014774085.1	ncRNA:19   AUAAAAGAAUCAAAGAUAG   1   *||||*||||||||||||= targets:93   CAUUUACUUAGUUUCUAUU   111 Target Full Sequence	3.0	PREDICTED: Glycine max serine/threonine-protein kinase prpf4B-like (LOC100814081), transcript variant X2, mRNA	serine/threonine-protein kinase prpf4B-like(LOC100814081)	coding protein	psRNATarget