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BaseInfo

ncRNA ID	bra-miR403-3p
Species	Brassica rapa
Class	miRNA
Genome position	chrA5:266420-266530 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	14 - UUAGAUUCACGCACAAACUCG - 34
Stem-loop(if miRNA)	AGAG     U  U     AU    U                  UAU  UCAU    U     AAGAG CA AUUAC  GUUU GUGCGUGAAUCUAAUUCG   GC    GUAG A     ||||| || |||||  |||| ||||||||||||||||||   ||    |||| A     UUUUC GU UAAUG  CAAA CACGCACUUAGAUUAGGU   UG    UAUC U ----     U  C     CU    -                  UGU  -UUC    C
Stem-loop sequence	AGAGAAGAGUCAUAUUACAUGUUUUGUGCGUGAAUCUAAUUCGUAUGCUCAUGUAGUAAUCCUAUCUUGUUGUUGGAUUAGAUUCACGCACAAACUCGUAAUCUGUCUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009126654.2	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *|||||||||||||||||||| targets:3274   GGAGUUUGUGCGUGAAUCUAA   3294 Target Full Sequence	0.0	PREDICTED: Brassica rapa protein argonaute 2-like (LOC103849944), transcript variant X2, mRNA	protein argonaute 2-like(LOC103849944)	coding protein	psRNATarget
XM_009126653.2	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *|||||||||||||||||||| targets:3277   GGAGUUUGUGCGUGAAUCUAA   3297 Target Full Sequence	0.0	PREDICTED: Brassica rapa protein argonaute 2-like (LOC103849944), transcript variant X1, mRNA	protein argonaute 2-like(LOC103849944)	coding protein	psRNATarget
XM_009116755.2	ncRNA:21   GCUCAAACACGCACUUAGAUU   1   *|||||||||||||||||||| targets:3394   GGAGUUUGUGCGUGAAUCUAA   3414 Target Full Sequence	0.0	PREDICTED: Brassica rapa protein argonaute 2 (LOC103840257), mRNA	protein argonaute 2(LOC103840257)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).