Search result

BaseInfo

ncRNA ID	novel_gma_miR846
Species	Glycine max
Class	miRNA
Genome position	Chr20:46507923-46508004 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451635;SRR1451648;SRR1451612;SRR1451615;SRR1451624
Length	21
Mature sequence(if miRNA)	1 - UUAAAAAGUGUAUGUGUAGAU - 21
Stem-loop(if miRNA)	--                     CA       ACAUA        CUAUGCAUAUACUUUUUAAUC  UUUUAGU     CUAUUU   |||||||||||||||||||||  |||||||     |||||U   GAUGUGUAUGUGAAAAAUUAG  AAAAUCA     GAUAGG UA                     AG       ---AG
Stem-loop sequence	CUAUGCAUAUACUUUUUAAUCCAUUUUAGUACAUACUAUUUUGGAUAGGAACUAAAAGAGAUUAAAAAGUGUAUGUGUAGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006576555.2	ncRNA:21   UAGAUGUGUAUGUGAAAAAUU   1   **|||||||||||||||||** targets:119   UACUACACAUACACUUUUUUC   139 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor HY5-like (LOC100783826), transcript variant X1, mRNA	transcription factor HY5-like(LOC100783826)	coding protein	psRNATarget
XM_006576556.2	ncRNA:21   UAGAUGUGUAUGUGAAAAAUU   1   **|||||||||||||||||** targets:127   UACUACACAUACACUUUUUUC   147 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor HY5-like (LOC100783826), transcript variant X2, mRNA	transcription factor HY5-like(LOC100783826)	coding protein	psRNATarget
XM_003544552.3	ncRNA:21   UAGAUGUGUAUGUGAAAAAUU   1   *||||||*|*||||||||||| targets:94   CUCUACAAACACACUUUUUAA   114 Target Full Sequence	2.5	PREDICTED: Glycine max aspartate aminotransferase P2, mitochondrial-like (LOC100811514), transcript variant X1, mRNA	aspartate aminotransferase P2, mitochondrial-like(LOC100811514)	coding protein	psRNATarget
XM_006599236.2	ncRNA:21   UAGAUGUGUAUGUGAAAAAUU   1   ***|||||||||||*|||||| targets:467   CGAUACACAUACACAUUUUAA   487 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100788736 (LOC100788736), transcript variant X1, mRNA	uncharacterized LOC100788736(LOC100788736)	coding protein	psRNATarget
XM_003521103.3	ncRNA:21   UAGAUGUGUAUGUGAAAAAUU   1   =***|||=||||||||||||| targets:387   GGACACAUAUACACUUUUUAA   407 Target Full Sequence	3.0	PREDICTED: Glycine max triacylglycerol lipase SDP1-like (LOC100791261), mRNA	triacylglycerol lipase SDP1-like(LOC100791261)	coding protein	psRNATarget