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BaseInfo

ncRNA ID bra-miR403-5p
Species Brassica rapa
Class miRNA
Genome position chrA5:266420-266530 [-]
Reference genome Brapa_1.1
Source miRBase
Length 22
Mature sequence(if miRNA) 71 - UGUUUUGUGCGUGAAUCUAAUU - 92
Stem-loop(if miRNA) AGAG     U  U     AU    U                  UAU  UCAU    U
    AAGAG CA AUUAC  GUUU GUGCGUGAAUCUAAUUCG   GC    GUAG A
    ||||| || |||||  |||| ||||||||||||||||||   ||    |||| A
    UUUUC GU UAAUG  CAAA CACGCACUUAGAUUAGGU   UG    UAUC U
----     U  C     CU    -                  UGU  -UUC    C
Stem-loop sequence AGAGAAGAGUCAUAUUACAUGUUUUGUGCGUGAAUCUAAUUCGUAUGCUCAUGUAGUAAUCCUAUCUUGUUGUUGGAUUAGAUUCACGCACAAACUCGUAAUCUGUCUUUU

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).