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BaseInfo

ncRNA ID	bra-miR164a
Species	Brassica rapa
Class	miRNA
Genome position	chrA5:150875-150966 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	63 - UGGAGAAGCAGGGCACGUGCA - 83
Stem-loop(if miRNA)	C   CAC       A  CA             CCAACAA   C    U  CUC   GUUGGAG AG  GGGCACGUGCAAA       ACA GAGA C  |||   ||||||| ||  |||||||||||||       ||| ||||  GAG   CAACCUC UC  CUCGUGCACGUUU       UGU CUCU U C   -UA       C  AC             -----AA   A    A
Stem-loop sequence	CCUCCACGUUGGAGAAGCAGGGCACGUGCAAACCAACAAACACGAGAUCUAUCUCAUGUAAUUUGCACGUGCUCCACUCCUCCAACAUGAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009124071.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   |*=|||||||||||||||||| targets:839   UUUACGUGCCCUGCUUCUCCA   859 Target Full Sequence	1.0	PREDICTED: Brassica rapa NAC domain-containing protein 79 (LOC103847039), mRNA	NAC domain-containing protein 79(LOC103847039)	coding protein	psRNATarget
XM_009131923.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   |*=|||||||||||||||||| targets:839   UUUACGUGCCCUGCUUCUCCA   859 Target Full Sequence	1.0	PREDICTED: Brassica rapa NAC domain-containing protein 100-like (LOC103854956), mRNA	NAC domain-containing protein 100-like(LOC103854956)	coding protein	psRNATarget
XM_009127451.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **=|||||||||||||||||| targets:820   CUUACGUGCCCUGCUUCUCCA   840 Target Full Sequence	1.0	PREDICTED: Brassica rapa NAC domain-containing protein 79-like (LOC103850666), mRNA	NAC domain-containing protein 79-like(LOC103850666)	coding protein	psRNATarget
XM_009138223.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **=|||||||||||||||||| targets:859   GUUACGUGCCCUGCUUCUCCA   879 Target Full Sequence	1.0	PREDICTED: Brassica rapa NAC domain-containing protein 100 (LOC103860593), mRNA	NAC domain-containing protein 100(LOC103860593)	coding protein	psRNATarget
XM_009148315.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||*|||||||||||||||| targets:775   AGCAAGUGCCCUGCUUCUCCA   795 Target Full Sequence	1.0	PREDICTED: Brassica rapa NAC domain-containing protein 21/22 (LOC103870203), transcript variant X2, mRNA	NAC domain-containing protein 21/22(LOC103870203)	coding protein	psRNATarget
XM_009148314.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||*|||||||||||||||| targets:795   AGCAAGUGCCCUGCUUCUCCA   815 Target Full Sequence	1.0	PREDICTED: Brassica rapa NAC domain-containing protein 21/22 (LOC103870203), transcript variant X1, mRNA	NAC domain-containing protein 21/22(LOC103870203)	coding protein	psRNATarget
XM_009137020.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||*|||||||||||||||| targets:745   AGCAAGUGCCCUGCUUCUCCA   765 Target Full Sequence	1.0	PREDICTED: Brassica rapa NAC domain-containing protein 21/22-like (LOC103859485), mRNA	NAC domain-containing protein 21/22-like(LOC103859485)	coding protein	psRNATarget
XM_009108564.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||*|||||||||||||||| targets:813   AGCAAGUGCCCUGCUUCUCCA   833 Target Full Sequence	1.0	PREDICTED: Brassica rapa NAC domain-containing protein 21/22 (LOC103832544), mRNA	NAC domain-containing protein 21/22(LOC103832544)	coding protein	psRNATarget
XM_009118824.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||||||||||||*|||||* targets:260   GGCACGUGCCCUGCCUCUCCU   280 Target Full Sequence	2.5	PREDICTED: Brassica rapa E3 ubiquitin-protein ligase ORTHRUS 2-like (LOC103842200), mRNA	E3 ubiquitin-protein ligase ORTHRUS 2-like(LOC103842200)	coding protein	psRNATarget
XM_009141661.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||= targets:877   CUCACGUGACCUGCUUCUCCG   897 Target Full Sequence	2.5	PREDICTED: Brassica rapa NAC domain-containing protein 92 (LOC103863903), mRNA	NAC domain-containing protein 92(LOC103863903)	coding protein	psRNATarget
XM_009126860.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||= targets:847   CUCACGUGACCUGCUUCUCCG   867 Target Full Sequence	2.5	PREDICTED: Brassica rapa NAC domain-containing protein 92-like (LOC103850145), mRNA	NAC domain-containing protein 92-like(LOC103850145)	coding protein	psRNATarget
XM_009135574.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **|=|*||||||||||||||* targets:717   CUCGCUUGCCCUGCUUCUCCC   737 Target Full Sequence	3.0	PREDICTED: Brassica rapa UDP-glucuronic acid decarboxylase 4 (LOC103858252), mRNA	UDP-glucuronic acid decarboxylase 4(LOC103858252)	coding protein	psRNATarget

Reference

1	PMID:18558089 "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"; He XF, Fang YY, Feng L, Guo HS; FEBS Lett. 582:2445-2452(2008).
2	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).