Search result

BaseInfo

ncRNA ID novel_gma_miR834
Species Glycine max
Class miRNA
Genome position Chr10:5762873-5762951 [+]
Reference genome Glycine_max_v2.0
Source SRR1451635
Length 24
Mature sequence(if miRNA) 56 - UUAUAAAAACCGUCUUUGUUAGUC - 79
Stem-loop(if miRNA) --       CA   -A                 CAA     
  CUAACGA  GCG  UUUUAUAGAACCGCCUU   UGUGAA
  |||||||  |||  |||||||||||||||||   |||||G
  GAUUGUU  UGC  AAAAUAUUUUGGCGGAA   ACAUUG
CU       UC   CA                 ---     
Stem-loop sequence CUAACGACAGCGAUUUUAUAGAACCGCCUUCAAUGUGAAGGUUACAAAGGCGGUUUUAUAAAAACCGUCUUUGUUAGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014773514.1
ncRNA:24   CUGAUUGUUUCUGCCAAAAAUAUU   1
  *|*||||||*|||||||||||*||
targets:427   UAAUAACAACGACGGUUUUUAAAA   450

2.5 PREDICTED: Glycine max uncharacterized LOC106798042 (LOC106798042), transcript variant X1, mRNA uncharacterized LOC106798042(LOC106798042) coding protein psRNATarget
XM_014772367.1
ncRNA:24   CUGAUUGUUUCUGCCAAAAAUAUU   1
  *=||=*=||*||||||||||||||
targets:518   UGCUGUUAACGACGGUUUUUAUAA   541

3.0 PREDICTED: Glycine max UV radiation resistance-associated gene protein-like (LOC100775647), transcript variant X2, mRNA UV radiation resistance-associated gene protein-like(LOC100775647) coding protein psRNATarget
XM_014772366.1
ncRNA:24   CUGAUUGUUUCUGCCAAAAAUAUU   1
  *=||=*=||*||||||||||||||
targets:518   UGCUGUUAACGACGGUUUUUAUAA   541

3.0 PREDICTED: Glycine max UV radiation resistance-associated gene protein-like (LOC100775647), transcript variant X1, mRNA UV radiation resistance-associated gene protein-like(LOC100775647) coding protein psRNATarget