ncRNA ID | novel_gma_miR832 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr17:24067819-24067933 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451635 |
Length | 21 |
Mature sequence(if miRNA) | 95 - CCGGAAGAAGAAGGUGGGCUU - 115 |
Stem-loop(if miRNA) |
--                 G              ----    U    C    C     G   CCGGAAGAAGAAGGUGG CUUCCGGAAGAACU    UCCG AAUA GUUC GGAAG A   ||||||||||||||||| ||||||||||||||    |||| |||| |||| ||||| C   GGCCUUCUUCUUCCACC GAAGGCCUUCUUGG    AGGC UUAU CGAG CCUUC G AA                 A              AAGA    C    U    A     U |
Stem-loop sequence | CCGGAAGAAGAAGGUGGGCUUCCGGAAGAACUUCCGUAAUACGUUCCGGAAGGACGUCUUCCAGAGCUUAUUCCGGAAGAAGGUUCUUCCGGAAGACCACCUUCUUCUUCCGGAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003538993.3 |
|
2.5 | PREDICTED: Glycine max probable transcription factor PosF21 (LOC100814674), mRNA | probable transcription factor PosF21(LOC100814674) | coding protein | psRNATarget | |||||||||
XM_003547589.3 |
|
3.0 | PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g17630 (LOC100815287), mRNA | putative pentatricopeptide repeat-containing protein At1g17630(LOC100815287) | coding protein | psRNATarget |