ncRNA ID | novel_gma_miR828 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr17:5843615-5843701 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451635;SRR1451641;SRR1451644;SRR1451646;SRR1295517;SRR835771;SRR1451607;SRR1451609;SRR1451610;SRR1451613;SRR1451615;SRR1451617;SRR1451618;SRR1451620 |
Length | 22 |
Mature sequence(if miRNA) | 66 - CAAGAAAAUGAAUGGUGAGGAU - 87 |
Stem-loop(if miRNA) |
--     G                C   -----AAUA      AUU   CCUCA CAUUCAUUUUCUUGGA UCU         GAUAAG   A   ||||| |||||||||||||||| |||         ||||||   GGAGU GUAAGUAAAAGAACCU AGA         UUAUUC   G UA     G                U   AAACCAAUA      AGU |
Stem-loop sequence | CCUCAGCAUUCAUUUUCUUGGACUCUAAUAGAUAAGAUUAGUGACUUAUUAUAACCAAAAGAUUCCAAGAAAAUGAAUGGUGAGGAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003520509.3 |
|
2.0 | PREDICTED: Glycine max isoamylase 2, chloroplastic-like (LOC100797949), mRNA | isoamylase 2, chloroplastic-like(LOC100797949) | coding protein | psRNATarget | |||||||||
BT090117.1 |
|
3.0 | Soybean clone JCVI-FLGm-3N9 unknown mRNA | NA | coding protein | psRNATarget | |||||||||
NM_001251455.2 |
|
3.0 | Glycine max response regulator ARR6-like (LOC100306152), mRNA | uncharacterized LOC100306152(LOC100306152) | coding protein | psRNATarget |