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BaseInfo

ncRNA ID novel_gma_miR828
Species Glycine max
Class miRNA
Genome position Chr17:5843615-5843701 [+]
Reference genome Glycine_max_v2.0
Source SRR1451635;SRR1451641;SRR1451644;SRR1451646;SRR1295517;SRR835771;SRR1451607;SRR1451609;SRR1451610;SRR1451613;SRR1451615;SRR1451617;SRR1451618;SRR1451620
Length 22
Mature sequence(if miRNA) 66 - CAAGAAAAUGAAUGGUGAGGAU - 87
Stem-loop(if miRNA) --     G                C   -----AAUA      AUU
  CCUCA CAUUCAUUUUCUUGGA UCU         GAUAAG   A
  ||||| |||||||||||||||| |||         ||||||
  GGAGU GUAAGUAAAAGAACCU AGA         UUAUUC   G
UA     G                U   AAACCAAUA      AGU
Stem-loop sequence CCUCAGCAUUCAUUUUCUUGGACUCUAAUAGAUAAGAUUAGUGACUUAUUAUAACCAAAAGAUUCCAAGAAAAUGAAUGGUGAGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003520509.3
ncRNA:22   UAGGAGUGGUAAGUAAAAGAAC   1
  |*||||||*||||||||||||*
targets:2365   AACCUCACAAUUCAUUUUCUUU   2386

2.0 PREDICTED: Glycine max isoamylase 2, chloroplastic-like (LOC100797949), mRNA isoamylase 2, chloroplastic-like(LOC100797949) coding protein psRNATarget
BT090117.1
ncRNA:22   UAGGA-GUGGUAAGUAAAAGAAC   1
  *||||-||||||||||||||||*
targets:89   UUCCUUCACCAUUCAUUUUCUUU   111

3.0 Soybean clone JCVI-FLGm-3N9 unknown mRNA NA coding protein psRNATarget
NM_001251455.2
ncRNA:22   UAGGA-GUGGUAAGUAAAAGAAC   1
  *||||-||||||||||||||||*
targets:87   UUCCUUCACCAUUCAUUUUCUUU   109

3.0 Glycine max response regulator ARR6-like (LOC100306152), mRNA uncharacterized LOC100306152(LOC100306152) coding protein psRNATarget