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BaseInfo

ncRNA ID bra-miR390-3p
Species Brassica rapa
Class miRNA
Genome position chrA4:16514660-16514764 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 68 - CGCUGUCCAUCCUGAGUUUCA - 88
Stem-loop(if miRNA)     --      AU U  A          G           UCAUG   ACA
GUAG  AGAAGA  C GU AAGCUCAGGA GGAUAGCGCCA     AUC   C
||||  ||||||  | || |||||||||| |||||||||||     |||   A
CAUC  UCUUCU  G UA UUUGAGUCCU CCUGUCGCGGU     UAG   C
    AU      CG U  C          A           UUUUA   CUA
Stem-loop sequence GUAGAGAAGAAUCUGUAAAGCUCAGGAGGGAUAGCGCCAUCAUGAUCACACACAUCGAUAUUUUUGGCGCUGUCCAUCCUGAGUUUCAUUGGCUCUUCUUACUAC

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).