Search result

BaseInfo

ncRNA ID	novel_gma_miR821
Species	Glycine max
Class	miRNA
Genome position	Chr16:3570330-3570437 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451635;SRR1451652;SRR1451660;SRR1451607;SRR1451608
Length	24
Mature sequence(if miRNA)	85 - ACUUAUAUAGUUUAUCUCGGCACU - 108
Stem-loop(if miRNA)	--UA    A                          AGGCUUAA    A  C     AA     CCGA AUAAACUAUAUAAGUGGGGAGCAAUC        CUCA CC UACAA  U     |||| ||||||||||||||||||||||||||        |||| || |||||  C     GGCU UAUUUGAUAUAUUCACUCCUCGUUAG        GAGU GG AUGUU  G UCAC    C                          --------    -  A     CG
Stem-loop sequence	UACCGAAAUAAACUAUAUAAGUGGGGAGCAAUCAGGCUUAACUCAACCCUACAAAAUCGGCUUGUAAGGUGAGGAUUGCUCCUCACUUAUAUAGUUUAUCUCGGCACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014775065.1	ncRNA:24   UCACGGCUCUAUUUGAUAUAUUCA   1   ||||=||||||||||||||||||| targets:2794   AGUGUCGAGAUAAACUAUAUAAGU   2817 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X4, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775059.1	ncRNA:24   UCACGGCUCUAUUUGAUAUAUUCA   1   ||||=||||||||||||||||||| targets:2647   AGUGUCGAGAUAAACUAUAUAAGU   2670 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X1, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775066.1	ncRNA:24   UCACGGCUCUAUUUGAUAUAUUCA   1   ||||=||||||||||||||||||| targets:2791   AGUGUCGAGAUAAACUAUAUAAGU   2814 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X5, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775062.1	ncRNA:24   UCACGGCUCUAUUUGAUAUAUUCA   1   ||||=||||||||||||||||||| targets:2792   AGUGUCGAGAUAAACUAUAUAAGU   2815 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X3, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775060.1	ncRNA:24   UCACGGCUCUAUUUGAUAUAUUCA   1   ||||=||||||||||||||||||| targets:2792   AGUGUCGAGAUAAACUAUAUAAGU   2815 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X2, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014774673.1	ncRNA:24   UC---ACGGCUCUAUUUGAUAUAUUCA   1   ||---||=|*|||||||*||||||||| targets:2326   AGAUAUGUCAAGAUAAAAUAUAUAAGU   2352 Target Full Sequence	2.5	PREDICTED: Glycine max scarecrow-like protein 3 (LOC106798410), mRNA	scarecrow-like protein 3(LOC106798410)	coding protein	psRNATarget
XM_003555071.3	ncRNA:24   UCACGGCUCUAUUUGAUAUAUUCA   1   |*|*||*|||||||*||||||||| targets:50   AAUACCAAGAUAAAAUAUAUAAGU   73 Target Full Sequence	2.5	PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100818044), mRNA	UPF0481 protein At3g47200-like(LOC100818044)	coding protein	psRNATarget