ncRNA ID | novel_gma_miR819 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr13:23021081-23021211 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1294479;SRR1294478 |
Length | 25 |
Mature sequence(if miRNA) | 107 - AAGCAUUUUUAAAAAUUAGAGGACC - 131 |
Stem-loop(if miRNA) |
--                          AUUGAAA   ACA      ----U   AAACCG     AU   UCUUCUAAUUUUUAAAAAUGCUUCAA       CUG   CCGUUG     UGA      UCACU  U   ||||||||||||||||||||||||||       |||   ||||||     |||      |||||  C   AGGAGAUUAAAAAUUUUUACGAAGUU       GAU   GGUAAU     ACU      AGUGA  G CC                          AGUCCAA   --A      UUAAU   GCAAAA     AU |
Stem-loop sequence | UCUUCUAAUUUUUAAAAAUGCUUCAAAUUGAAACUGACACCGUUGUUGAAAACCGUCACUAUUCGUAAGUGAAAAACGUCAUAAUUUAAUGGAUAGAACCUGAUUGAAGCAUUUUUAAAAAUUAGAGGACC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006579760.2 |
|
2.5 | PREDICTED: Glycine max protein RRP6-like 2 (LOC100819332), transcript variant X3, mRNA | protein RRP6-like 2(LOC100819332) | coding protein | psRNATarget | |||||||||
XM_014775562.1 |
|
2.5 | PREDICTED: Glycine max protein RRP6-like 2 (LOC100819332), transcript variant X2, mRNA | protein RRP6-like 2(LOC100819332) | coding protein | psRNATarget | |||||||||
XM_003525667.3 |
|
2.5 | PREDICTED: Glycine max protein RRP6-like 2 (LOC100819332), transcript variant X1, mRNA | protein RRP6-like 2(LOC100819332) | coding protein | psRNATarget |