Search result

BaseInfo

ncRNA ID novel_gma_miR819
Species Glycine max
Class miRNA
Genome position Chr13:23021081-23021211 [+]
Reference genome Glycine_max_v2.0
Source SRR1294479;SRR1294478
Length 25
Mature sequence(if miRNA) 107 - AAGCAUUUUUAAAAAUUAGAGGACC - 131
Stem-loop(if miRNA) --                          AUUGAAA   ACA      ----U   AAACCG     AU
  UCUUCUAAUUUUUAAAAAUGCUUCAA       CUG   CCGUUG     UGA      UCACU  U
  ||||||||||||||||||||||||||       |||   ||||||     |||      |||||  C
  AGGAGAUUAAAAAUUUUUACGAAGUU       GAU   GGUAAU     ACU      AGUGA  G
CC                          AGUCCAA   --A      UUAAU   GCAAAA     AU
Stem-loop sequence UCUUCUAAUUUUUAAAAAUGCUUCAAAUUGAAACUGACACCGUUGUUGAAAACCGUCACUAUUCGUAAGUGAAAAACGUCAUAAUUUAAUGGAUAGAACCUGAUUGAAGCAUUUUUAAAAAUUAGAGGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006579760.2
ncRNA:25   CCAGGAGAUUAAAAAUUUUUACGAA   1
  *|||*||*||||||*||||||||||
targets:2357   UGUCAUCAAAUUUUAAAAAAUGCUU   2381

2.5 PREDICTED: Glycine max protein RRP6-like 2 (LOC100819332), transcript variant X3, mRNA protein RRP6-like 2(LOC100819332) coding protein psRNATarget
XM_014775562.1
ncRNA:25   CCAGGAGAUUAAAAAUUUUUACGAA   1
  *|||*||*||||||*||||||||||
targets:2369   UGUCAUCAAAUUUUAAAAAAUGCUU   2393

2.5 PREDICTED: Glycine max protein RRP6-like 2 (LOC100819332), transcript variant X2, mRNA protein RRP6-like 2(LOC100819332) coding protein psRNATarget
XM_003525667.3
ncRNA:25   CCAGGAGAUUAAAAAUUUUUACGAA   1
  *|||*||*||||||*||||||||||
targets:2523   UGUCAUCAAAUUUUAAAAAAUGCUU   2547

2.5 PREDICTED: Glycine max protein RRP6-like 2 (LOC100819332), transcript variant X1, mRNA protein RRP6-like 2(LOC100819332) coding protein psRNATarget