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BaseInfo

ncRNA ID novel_gma_miR818
Species Glycine max
Class miRNA
Genome position Chr15:8262045-8262228 [+]
Reference genome Glycine_max_v2.0
Source SRR1451635
Length 21
Mature sequence(if miRNA) 164 - UUCUUAUUUUCUUCUCUUAGA - 184
Stem-loop(if miRNA) --                          -                    A   --UG  ---        AG          --UAAA     UAA
  UAGGAGAAGAAAAUAAGAAGAAAAAA UGAAAUGAGUUUUUCUAUAA CUU    UA   UAUGCACA  UUAAUUUGUA      CUCUC   A
  |||||||||||||||||||||||||| |||||||||||||||||||| |||    ||   ||||||||  ||||||||||      |||||
  AUUCUCUUCUUUUAUUCUUCUUUUUU ACUUUACUCGAAGAGGUGUU GAG    AU   AUACGUGU  GAUUAAACAU      GAGAG   A
AG                          U                    C   UUUA  UGA        CU          CUGUCA     UAG
Stem-loop sequence UAGGAGAAGAAAAUAAGAAGAAAAAAUGAAAUGAGUUUUUCUAUAAACUUUGUAUAUGCACAAGUUAAUUUGUAUAAACUCUCUAAAAGAUGAGAGACUGUCUACAAAUUAGUCUGUGCAUAAGUUAAUUUGAGCUUGUGGAGAAGCUCAUUUCAUUUUUUUCUUCUUAUUUUCUUCUCUUAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006599083.2
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |=|||||||||||||||||||
targets:521   UUUAAGAGAAGAAAAUAAGAA   541

0.0 PREDICTED: Glycine max uncharacterized LOC100797525 (LOC100797525), transcript variant X4, mRNA uncharacterized LOC100797525(LOC100797525) coding protein psRNATarget
XM_006599081.2
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |=|||||||||||||||||||
targets:521   UUUAAGAGAAGAAAAUAAGAA   541

0.0 PREDICTED: Glycine max uncharacterized LOC100797525 (LOC100797525), transcript variant X2, mRNA uncharacterized LOC100797525(LOC100797525) coding protein psRNATarget
XM_014768128.1
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |*||=||||||||||||||||
targets:1454   UAUAGGAGAAGAAAAUAAGAA   1474

1.0 PREDICTED: Glycine max E3 ubiquitin-protein ligase RGLG2-like (LOC100803177), transcript variant X5, mRNA E3 ubiquitin-protein ligase RGLG2-like(LOC100803177) coding protein psRNATarget
XM_014768125.1
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |*||=||||||||||||||||
targets:1457   UAUAGGAGAAGAAAAUAAGAA   1477

1.0 PREDICTED: Glycine max E3 ubiquitin-protein ligase RGLG2-like (LOC100803177), transcript variant X1, mRNA E3 ubiquitin-protein ligase RGLG2-like(LOC100803177) coding protein psRNATarget
XM_014768127.1
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |*||=||||||||||||||||
targets:1529   UAUAGGAGAAGAAAAUAAGAA   1549

1.0 PREDICTED: Glycine max E3 ubiquitin-protein ligase RGLG2-like (LOC100803177), transcript variant X4, mRNA E3 ubiquitin-protein ligase RGLG2-like(LOC100803177) coding protein psRNATarget
XM_003541946.3
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |*||=||||||||||||||||
targets:2126   UAUAGGAGAAGAAAAUAAGAA   2146

1.0 PREDICTED: Glycine max protein SAND-like (LOC100814534), transcript variant X2, mRNA protein SAND-like(LOC100814534) coding protein psRNATarget
XM_014776866.1
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |*||=||||||||||||||||
targets:298   UAUAGGAGAAGAAAAUAAGAA   318

1.0 PREDICTED: Glycine max U-box domain-containing protein 35-like (LOC100818628), transcript variant X2, mRNA U-box domain-containing protein 35-like(LOC100818628) coding protein psRNATarget
BT091702.1
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  **|||||*|||||||||||||
targets:353   GAUAAGAAAAGAAAAUAAGAA   373

1.0 Soybean clone JCVI-FLGm-8J9 unknown mRNA NA coding protein psRNATarget
XM_003544460.3
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |||||**||||||||||||||
targets:785   UCUAACCGAAGAAAAUAAGAA   805

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein HAT9-like (LOC100807072), mRNA homeobox-leucine zipper protein HAT9-like(LOC100807072) coding protein psRNATarget
BT094177.1
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |*||=*|||||||||||||||
targets:126   UAUAGAAGAAGAAAAUAAGAA   146

2.0 Soybean clone JCVI-FLGm-14B17 unknown mRNA NA coding protein psRNATarget
BT092036.1
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |*||||=*|||||||||||||
targets:343   UAUAAGGAAAGAAAAUAAGAA   363

2.0 Soybean clone JCVI-FLGm-9M10 unknown mRNA NA coding protein psRNATarget
XM_014764118.1
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |*||=*|||||||||||||||
targets:919   UAUAGAAGAAGAAAAUAAGAA   939

2.0 PREDICTED: Glycine max uncharacterized LOC100779185 (LOC100779185), transcript variant X3, mRNA uncharacterized LOC100779185(LOC100779185) coding protein psRNATarget
XM_003529840.3
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  **|=||||||||||=||||||
targets:1516   GAUGAGAGAAGAAAGUAAGAA   1536

2.5 PREDICTED: Glycine max dynamin-related protein 5A-like (LOC100793097), mRNA dynamin-related protein 5A-like(LOC100793097) coding protein psRNATarget
KT031200.1
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  ***|||||||||=||||||||
targets:81   GACAAGAGAAGAGAAUAAGAA   101

2.5 Glycine max clone HN_CCL_92 MYB/HD-like transcription factor (Glyma11g34930.7) mRNA, partial cds NA coding protein psRNATarget
XM_003556912.3
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |||||*||*||||||||||||
targets:923   UCUAACAGUAGAAAAUAAGAA   943

2.5 PREDICTED: Glycine max homeobox-leucine zipper protein HAT9-like (LOC100797650), mRNA homeobox-leucine zipper protein HAT9-like(LOC100797650) coding protein psRNATarget
XM_014764235.1
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  ***|||||||||=||||||||
targets:404   GACAAGAGAAGAGAAUAAGAA   424

2.5 PREDICTED: Glycine max transcription factor DIVARICATA (LOC100788982), transcript variant X5, mRNA transcription factor DIVARICATA(LOC100788982) coding protein psRNATarget
XM_003538401.3
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  ***|||||||||=||||||||
targets:463   GACAAGAGAAGAGAAUAAGAA   483

2.5 PREDICTED: Glycine max transcription factor DIVARICATA (LOC100788982), transcript variant X3, mRNA transcription factor DIVARICATA(LOC100788982) coding protein psRNATarget
XM_014764233.1
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  ***|||||||||=||||||||
targets:478   GACAAGAGAAGAGAAUAAGAA   498

2.5 PREDICTED: Glycine max transcription factor DIVARICATA (LOC100788982), transcript variant X2, mRNA transcription factor DIVARICATA(LOC100788982) coding protein psRNATarget
XM_014764234.1
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  ***|||||||||=||||||||
targets:505   GACAAGAGAAGAGAAUAAGAA   525

2.5 PREDICTED: Glycine max transcription factor DIVARICATA (LOC100788982), transcript variant X4, mRNA transcription factor DIVARICATA(LOC100788982) coding protein psRNATarget
XM_006591314.2
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  ***|||||||||=||||||||
targets:537   GACAAGAGAAGAGAAUAAGAA   557

2.5 PREDICTED: Glycine max transcription factor DIVARICATA (LOC100788982), transcript variant X1, mRNA transcription factor DIVARICATA(LOC100788982) coding protein psRNATarget
XM_006601902.2
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  ***|||||||||=||||||||
targets:506   GACAAGAGAAGAGAAUAAGAA   526

2.5 PREDICTED: Glycine max transcription factor DIVARICATA-like (LOC100783469), transcript variant X3, mRNA transcription factor DIVARICATA-like(LOC100783469) coding protein psRNATarget
XM_006601903.2
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  ***|||||||||=||||||||
targets:512   GACAAGAGAAGAGAAUAAGAA   532

2.5 PREDICTED: Glycine max transcription factor DIVARICATA-like (LOC100783469), transcript variant X2, mRNA transcription factor DIVARICATA-like(LOC100783469) coding protein psRNATarget
XM_006601900.2
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  ***|||||||||=||||||||
targets:548   GACAAGAGAAGAGAAUAAGAA   568

2.5 PREDICTED: Glycine max transcription factor DIVARICATA-like (LOC100783469), transcript variant X1, mRNA transcription factor DIVARICATA-like(LOC100783469) coding protein psRNATarget
XM_006601901.2
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  ***|||||||||=||||||||
targets:554   GACAAGAGAAGAGAAUAAGAA   574

2.5 PREDICTED: Glycine max transcription factor DIVARICATA-like (LOC100783469), transcript variant X4, mRNA transcription factor DIVARICATA-like(LOC100783469) coding protein psRNATarget
XM_006574366.2
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |*||=|||*||||||||||||
targets:1284   UAUAGGAGUAGAAAAUAAGAA   1304

2.5 PREDICTED: Glycine max uncharacterized LOC100798622 (LOC100798622), transcript variant X1, mRNA uncharacterized LOC100798622(LOC100798622) coding protein psRNATarget
NM_001248176.1
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |*|||||*|||=|||||||||
targets:402   UGUAAGAAAAGGAAAUAAGAA   422

2.5 Glycine max cytokinin-regulated kinase (LOC100305418), mRNA cytokinin-regulated kinase(LOC100305418) coding protein psRNATarget
FJ014784.1
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |*|||||*|||=|||||||||
targets:402   UGUAAGAAAAGGAAAUAAGAA   422

2.5 Glycine max clone cw101 cytokinin-regulated kinase mRNA, complete cds NA coding protein psRNATarget
AK245648.1
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  |*|||||*|||=|||||||||
targets:452   UGUAAGAAAAGGAAAUAAGAA   472

2.5 Glycine max cDNA, clone: GMFL01-36-K12 NA coding protein psRNATarget
XM_003541440.3
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  ||||=*|*|||||||||||||
targets:738   UCUAGAAAAAGAAAAUAAGAA   758

3.0 PREDICTED: Glycine max probable anion transporter 6, chloroplastic (LOC100806856), transcript variant X1, mRNA probable anion transporter 6, chloroplastic(LOC100806856) coding protein psRNATarget
XM_006594197.2
ncRNA:21   AGAUUCUCUUCUUUUAUUCUU   1
  ||||=*|*|||||||||||||
targets:738   UCUAGAAAAAGAAAAUAAGAA   758

3.0 PREDICTED: Glycine max probable anion transporter 6, chloroplastic (LOC100806856), transcript variant X2, mRNA probable anion transporter 6, chloroplastic(LOC100806856) coding protein psRNATarget
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