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BaseInfo

ncRNA ID novel_gma_miR817
Species Glycine max
Class miRNA
Genome position Chr15:33426618-33426737 [+]
Reference genome Glycine_max_v2.0
Source SRR1451635
Length 20
Mature sequence(if miRNA) 1 - UUGUUUUCCUUUUGUUUUCU - 20
Stem-loop(if miRNA) --        C         C  U       AG  A   CAU                 A
  UUGUUUUC UUUUGUUUU UG UUUCAAA  UU AUA   GAAACAGUGAAAAUAAU A
  |||||||| ||||||||| || |||||||  || |||   ||||||||||||||||| A
  AACAAAAG AAAACAAAA AC AAAGUUU  AA UAU   CUUUGUCACUUUUGUUG A
GG        U         -  U       CU  A   UUC                 A
Stem-loop sequence UUGUUUUCCUUUUGUUUUCUGUUUUCAAAAGUUAAUACAUGAAACAGUGAAAAUAAUAAAAAGUUGUUUUCACUGUUUCCUUUAUAAAUCUUUGAAAUCAAAAACAAAAUGAAAACAAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003531391.3
ncRNA:20   UCUUUUGUUUUCCUUUUGUU   1
  |||||||||||||||||*||
targets:324   AGAAAACAAAAGGAAAAAAA   343

1.5 PREDICTED: Glycine max zinc finger protein WIP2-like (LOC100818131), mRNA zinc finger protein WIP2-like(LOC100818131) coding protein psRNATarget
XM_003555850.3
ncRNA:20   UCUUUUGUUUUCCUUUUGUU   1
  *||||||||||||||||*||
targets:628   UGAAAACAAAAGGAAAAAAA   647

1.5 PREDICTED: Glycine max uncharacterized LOC100815402 (LOC100815402), mRNA uncharacterized LOC100815402(LOC100815402) coding protein psRNATarget
XM_003537276.2
ncRNA:20   UCUUUUGUUUUCCUUUUGUU   1
  ||=*||||||||||||||||
targets:2046   AGGCAACAAAAGGAAAACAA   2065

2.0 PREDICTED: Glycine max cation/H(+) antiporter 14-like (LOC100787550), mRNA cation/H(+) antiporter 14-like(LOC100787550) coding protein psRNATarget
XM_006583458.2
ncRNA:20   UCUUUUGUUUUCCUUUUGUU   1
  *||=|||||=||||||||||
targets:858   UGAGAACAAGAGGAAAACAA   877

2.5 PREDICTED: Glycine max transcription factor bHLH18-like (LOC100786209), mRNA transcription factor bHLH18-like(LOC100786209) coding protein psRNATarget
XM_003520348.3
ncRNA:20   UCUUUUGUUUUCCUUUUGUU   1
  *||=|||||=||||||||||
targets:881   UGAGAACAAGAGGAAAACAA   900

2.5 PREDICTED: Glycine max transcription factor bHLH18-like (LOC100808919), transcript variant X1, mRNA transcription factor bHLH18-like(LOC100808919) coding protein psRNATarget
XM_006576623.2
ncRNA:20   UCUUUUGUUUUCCUUUUGUU   1
  *||=|||||=||||||||||
targets:827   UGAGAACAAGAGGAAAACAA   846

2.5 PREDICTED: Glycine max transcription factor bHLH18-like (LOC100808919), transcript variant X2, mRNA transcription factor bHLH18-like(LOC100808919) coding protein psRNATarget
BT095759.1
ncRNA:20   UCUUUUGUUUUCCUUUUGUU   1
  *||||||||||||||||*|=
targets:1035   UGAAAACAAAAGGAAAAGAG   1054

2.5 Soybean clone JCVI-FLGm-19H18 unknown mRNA NA coding protein psRNATarget
NM_001254493.2
ncRNA:20   UCUUUUGUUUUCCUUUUGUU   1
  *||||||||||||||||*|=
targets:1033   UGAAAACAAAAGGAAAAGAG   1052

2.5 Glycine max ribosomal RNA assembly protein mis3-like (LOC100816856), mRNA ribosomal RNA assembly protein mis3-like(LOC100816856) coding protein psRNATarget
XM_003519425.3
ncRNA:20   UCUUUUGUUUUCCUUUUGUU   1
  *||||||||||||||||*|=
targets:1031   UGAAAACAAAAGGAAAAGAG   1050

2.5 PREDICTED: Glycine max KRR1 small subunit processome component homolog (LOC100783800), mRNA KRR1 small subunit processome component homolog(LOC100783800) coding protein psRNATarget
XM_006585657.2
ncRNA:20   UCUUUUGUUUUCCUUUUGUU   1
  ||||||*||||||||||*||
targets:134   AGAAAAGAAAAGGAAAAGAA   153

2.5 PREDICTED: Glycine max protein strawberry notch-like (LOC100804594), transcript variant X1, mRNA protein strawberry notch-like(LOC100804594) coding protein psRNATarget
XM_014779205.1
ncRNA:20   UCUUUUGUUUUCCUUUUGUU   1
  ||||||*||||||||||*||
targets:134   AGAAAAGAAAAGGAAAAGAA   153

2.5 PREDICTED: Glycine max protein strawberry notch-like (LOC100804594), transcript variant X2, mRNA protein strawberry notch-like(LOC100804594) coding protein psRNATarget
XM_014762041.1
ncRNA:20   UCUUUUGUUUUCC-UUUUGUU   1
  |||||||||||||-|||||||
targets:474   AGAAAACAAAAGGCAAAACAA   494

3.0 PREDICTED: Glycine max RING-box protein 2-like (LOC100790524), transcript variant X2, mRNA RING-box protein 2-like(LOC100790524) coding protein psRNATarget
XM_006587077.2
ncRNA:20   UCUUUUGUUUUCC-UUUUGUU   1
  |||||||||||||-|||||||
targets:425   AGAAAACAAAAGGCAAAACAA   445

3.0 PREDICTED: Glycine max RING-box protein 2-like (LOC100790524), transcript variant X3, mRNA RING-box protein 2-like(LOC100790524) coding protein psRNATarget
XM_014762040.1
ncRNA:20   UCUUUUGUUUUCC-UUUUGUU   1
  |||||||||||||-|||||||
targets:330   AGAAAACAAAAGGCAAAACAA   350

3.0 PREDICTED: Glycine max RING-box protein 2-like (LOC100790524), transcript variant X1, mRNA RING-box protein 2-like(LOC100790524) coding protein psRNATarget
XM_006594964.2
ncRNA:20   UCUUUUGUUUUCCUUUUGUU   1
  |||==|*|||||||||||||
targets:2184   AGAGGAAAAAAGGAAAACAA   2203

3.0 PREDICTED: Glycine max factor of DNA methylation 4-like (LOC100790432), transcript variant X2, mRNA factor of DNA methylation 4-like(LOC100790432) coding protein psRNATarget
XM_006594962.2
ncRNA:20   UCUUUUGUUUUCCUUUUGUU   1
  |||==|*|||||||||||||
targets:1385   AGAGGAAAAAAGGAAAACAA   1404

3.0 PREDICTED: Glycine max factor of DNA methylation 4-like (LOC100790432), transcript variant X1, mRNA factor of DNA methylation 4-like(LOC100790432) coding protein psRNATarget
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