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BaseInfo

ncRNA ID	bra-miR390-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA4:16514660-16514764 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	18 - AAGCUCAGGAGGGAUAGCGCC - 38
Stem-loop(if miRNA)	--      AU U  A          G           UCAUG   ACA GUAG  AGAAGA  C GU AAGCUCAGGA GGAUAGCGCCA     AUC   C ||||  ||||||  | || |||||||||| |||||||||||     |||   A CAUC  UCUUCU  G UA UUUGAGUCCU CCUGUCGCGGU     UAG   C     AU      CG U  C          A           UUUUA   CUA
Stem-loop sequence	GUAGAGAAGAAUCUGUAAAGCUCAGGAGGGAUAGCGCCAUCAUGAUCACACACAUCGAUAUUUUUGGCGCUGUCCAUCCUGAGUUUCAUUGGCUCUUCUUACUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009121430.2	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   **|||||*|||||||||*||| targets:1598   AACGCUAACCCUCCUGAUCUU   1618 Target Full Sequence	2.5	PREDICTED: Brassica rapa cytochrome P450 78A6 (LOC103844631), mRNA	cytochrome P450 78A6(LOC103844631)	coding protein	psRNATarget
XM_009150581.2	ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1   |*||**=|||||||||||||| targets:379   GACGAGGUCCCUCCUGAGCUU   399 Target Full Sequence	3.0	PREDICTED: Brassica rapa PHD finger protein ALFIN-LIKE 7 (LOC103872249), mRNA	PHD finger protein ALFIN-LIKE 7(LOC103872249)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).