Search result

BaseInfo

ncRNA ID bra-miR5711
Species Brassica rapa
Class miRNA
Genome position chrA4:15753060-15753167 [-]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 6 - UGUUUUGUGGGUUUCUACCGA - 26
Stem-loop(if miRNA) AUUGAUUA           A      U              AUAUUUU AGUACCACUCC
        CAUACUCGGUA AAGCCU CAAAAUAUGAGUUA       G           C
        ||||||||||| |||||| ||||||||||||||       |
        GUAUGAGCCAU UUUGGG GUUUUGUACUCAAU       C           C
--------           C      U              ------A AACACCGAAAA
Stem-loop sequence AUUGAUUACAUACUCGGUAAAAGCCUUCAAAAUAUGAGUUAAUAUUUUGAGUACCACUCCCCAAAAGCCACAACAUAACUCAUGUUUUGUGGGUUUCUACCGAGUAUG

Reference

1 PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa";
Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y;
J Exp Bot. 63:1025-1038(2012).