| ncRNA ID | bra-miR9559-3p |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA4:346426-346534 [+] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 72 - ACAAUGAACGAAAUCCAAAUC - 92 |
| Stem-loop(if miRNA) |
G C C G AAA UUG AAUCUUU UGU AUUAGGUUUGGAUUUUG UCAUUGUUGGG GGUUC A ||||||| ||| ||||||||||||||||| ||||||||||| ||||| A UUAGAAA ACA UAAUCUAAACCUAAAGC AGUAACAACCU UCAAG C G A U A AAA UAA |
| Stem-loop sequence | GAAUCUUUCUGUCAUUAGGUUUGGAUUUUGGUCAUUGUUGGGAAAGGUUCUUGAACAAUGAACUAAAUCCAACAAUGAACGAAAUCCAAAUCUAAUUACAAAAAGAUUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009119528.2 |
|
1.5 | PREDICTED: Brassica rapa wall-associated receptor kinase-like 5 (LOC103842861), transcript variant X2, mRNA | wall-associated receptor kinase-like 5(LOC103842861) | coding protein | psRNATarget | |||||||||
| XM_009119529.2 |
|
1.5 | PREDICTED: Brassica rapa wall-associated receptor kinase-like 5 (LOC103842861), transcript variant X3, mRNA | wall-associated receptor kinase-like 5(LOC103842861) | coding protein | psRNATarget | |||||||||
| XM_009112210.1 |
|
2.5 | PREDICTED: Brassica rapa serine incorporator 3-like (LOC103836002), transcript variant X1, mRNA | serine incorporator 3-like(LOC103836002) | coding protein | psRNATarget | |||||||||
| XM_009112211.2 |
|
2.5 | PREDICTED: Brassica rapa serine incorporator 3-like (LOC103836002), transcript variant X2, mRNA | serine incorporator 3-like(LOC103836002) | coding protein | psRNATarget |
| 1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |