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BaseInfo

ncRNA ID	bra-miR9559-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA4:346426-346534 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	20 - UUUGGAUUUUGGUCAUUGUUG - 40
Stem-loop(if miRNA)	G       C   C                 G           AAA     UUG  AAUCUUU UGU AUUAGGUUUGGAUUUUG UCAUUGUUGGG   GGUUC   A  ||||||| ||| ||||||||||||||||| |||||||||||   |||||   A  UUAGAAA ACA UAAUCUAAACCUAAAGC AGUAACAACCU   UCAAG   C G       A   U                 A           AAA     UAA
Stem-loop sequence	GAAUCUUUCUGUCAUUAGGUUUGGAUUUUGGUCAUUGUUGGGAAAGGUUCUUGAACAAUGAACUAAAUCCAACAAUGAACGAAAUCCAAAUCUAAUUACAAAAAGAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009150631.2	ncRNA:21   GUUGUUACUGGUUUUAGGUUU   1   ==||=|||||||||||||*|| targets:208   UGACGAUGACCAAAAUCCUAA   228 Target Full Sequence	2.5	PREDICTED: Brassica rapa jacalin-related lectin 36-like (LOC103872285), mRNA	jacalin-related lectin 36-like(LOC103872285)	coding protein	psRNATarget
XM_009111352.2	ncRNA:21   GUUGUUACUGGUUUUAGGUUU   1   ==||=|||||||||||||*|| targets:199   UGACGAUGACCAAAAUCCUAA   219 Target Full Sequence	2.5	PREDICTED: Brassica rapa jacalin-related lectin 36 (LOC103835222), mRNA	jacalin-related lectin 36(LOC103835222)	coding protein	psRNATarget
XM_009114248.2	ncRNA:21   GUUGUUACUGGUUUUAGGUUU   1   |=|||=**||||||||||||| targets:19   CGACAGAAACCAAAAUCCAAA   39 Target Full Sequence	3.0	PREDICTED: Brassica rapa splicing factor 3B subunit 4-like (LOC103837863), transcript variant X2, mRNA	splicing factor 3B subunit 4-like(LOC103837863)	coding protein	psRNATarget
XM_009114247.2	ncRNA:21   GUUGUUACUGGUUUUAGGUUU   1   |=|||=**||||||||||||| targets:18   CGACAGAAACCAAAAUCCAAA   38 Target Full Sequence	3.0	PREDICTED: Brassica rapa splicing factor 3B subunit 4-like (LOC103837863), transcript variant X1, mRNA	splicing factor 3B subunit 4-like(LOC103837863)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).