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BaseInfo

ncRNA ID novel_gma_miR781
Species Glycine max
Class miRNA
Genome position Chr18:16062492-16062572 [-]
Reference genome Glycine_max_v2.0
Source SRR1292924;SRR1294484;SRR1294485;SRR2968974;SRR2968978;SRR835770;SRR1292925;SRR1295524;SRR1295525;SRR1295526;SRR1295527;SRR1295530;SRR1451605;SRR1292928;SRR1451607;SRR1451609;SRR1292929;SRR1451610;SRR1451611;SRR1451616;SRR1451623
Length 21
Mature sequence(if miRNA) 1 - UCUGAAGUGUUUGGGGGAACC - 21
Stem-loop(if miRNA) --                 AC     -    AGUUUUGAAA
  UUCCCUCGAACACUUCA  GAGGA AAGC          U
  |||||||||||||||||  ||||| ||||
  AAGGGGGUUUGUGAAGU  CUCCU UUUG          U
CC                 CU     C    CUUCCAUAUA
Stem-loop sequence UUCCCUCGAACACUUCAACGAGGAAAGCAGUUUUGAAAUUAUAUACCUUCGUUUCUCCUCUCUGAAGUGUUUGGGGGAACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003543724.3
ncRNA:21   CCAAGGGGGUUUGUGAAGUCU   1
  *||||*||||||||||||||*
targets:331   AGUUCACCCAAACACUUCAGU   351

2.0 PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100798723), mRNA low affinity sulfate transporter 3-like(LOC100798723) coding protein psRNATarget
XM_014767214.1
ncRNA:21   CCAAGGGGGUUUGUGAAGUCU   1
  *||||*|||||||||||||*|
targets:516   AGUUCACCCAAACACUUCAAA   536

2.5 PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X3, mRNA low affinity sulfate transporter 3-like(LOC100776591) coding protein psRNATarget
XM_006596268.2
ncRNA:21   CCAAGGGGGUUUGUGAAGUCU   1
  *||||*|||||||||||||*|
targets:517   AGUUCACCCAAACACUUCAAA   537

2.5 PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X2, mRNA low affinity sulfate transporter 3-like(LOC100776591) coding protein psRNATarget
XM_006596269.2
ncRNA:21   CCAAGGGGGUUUGUGAAGUCU   1
  *||||*|||||||||||||*|
targets:520   AGUUCACCCAAACACUUCAAA   540

2.5 PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X4, mRNA low affinity sulfate transporter 3-like(LOC100776591) coding protein psRNATarget
XM_003544137.3
ncRNA:21   CCAAGGGGGUUUGUGAAGUCU   1
  *||||*|||||||||||||*|
targets:508   AGUUCACCCAAACACUUCAAA   528

2.5 PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X1, mRNA low affinity sulfate transporter 3-like(LOC100776591) coding protein psRNATarget