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BaseInfo

ncRNA ID bra-miR5719
Species Brassica rapa
Class miRNA
Genome position chrA3:30606326-30606529 [-]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 147 - UUGUGAUGAUAAUACGACUUC - 167
Stem-loop(if miRNA) U      U   -    -C    --       A     A                A         A   CC   C      A    UAAUC  CAUCAUCAAGCAUG
 GAUCUC CUU GCUU  UAAA  UUUUUUU GAUCU GUGUUGUGAUGAUAAU CGACUUCCA GAU  AAA CAACAA UUUC     GA              A
 |||||| ||| ||||  ||||  ||||||| ||||| |||||||||||||||| ||||||||| |||  ||| |||||| ||||     ||
 CUAGGG GAA CGAA  AUUU  AAAAAAA CUAGA CACAACACUACUAUUA GCUGAAGGU CUG  UUU GUUGUU AAAG     UU              G
A      U   A    AA    UC       A     A                G         A   -A   A      C    -----  GUACCAGUGGUACU
Stem-loop sequence UGAUCUCUCUUGCUUCUAAAUUUUUUUAGAUCUAGUGUUGUGAUGAUAAUACGACUUCCAAGAUCCAAACCAACAAAUUUCUAAUCGACAUCAUCAAGCAUGAGUCAUGGUGACCAUGUUGAAACUUGUUGAUUUAGUCAUGGAAGUCGGAUUAUCAUCACAACACAAGAUCAAAAAAAACUUUUAAAAAGCAAAGUGGGAUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009111113.2
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |||||||*|||||||||||||
targets:1465   GAAGUCGAAUUAUCAUCACAA   1485

1.0 PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103835021), transcript variant X1, mRNA probable disease resistance protein RPP1(LOC103835021) coding protein psRNATarget
XM_009111112.2
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |||||||*|||||||||||||
targets:1468   GAAGUCGAAUUAUCAUCACAA   1488

1.0 PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103835021), transcript variant X2, mRNA probable disease resistance protein RPP1(LOC103835021) coding protein psRNATarget
XM_009111725.2
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |=|||||*|||||||||||||
targets:1046   GGAGUCGGAUUAUCAUCACAA   1066

1.0 PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC103835544), mRNA disease resistance protein TAO1-like(LOC103835544) coding protein psRNATarget
XM_009111111.2
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |=|||||*|||||||||||||
targets:1227   GGAGUCGGAUUAUCAUCACAA   1247

1.0 PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103835020), mRNA probable disease resistance protein RPP1(LOC103835020) coding protein psRNATarget
XM_018655976.1
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  *||||*|*|||||||||||||
targets:1358   AAAGUAGGAUUAUCAUCACAA   1378

2.0 PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC103848935), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018655977.1
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  *||||*|*|||||||||||||
targets:1368   AAAGUAGGAUUAUCAUCACAA   1388

2.0 PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC103848935), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018652972.1
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |||||||*||||||||=||||
targets:2018   GAAGUCGAAUUAUCAUUACAA   2038

2.5 PREDICTED: Brassica rapa disease resistance protein TAO1 (RGA9), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018652973.1
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |||||||*||||||||=||||
targets:2018   GAAGUCGAAUUAUCAUUACAA   2038

2.5 PREDICTED: Brassica rapa disease resistance protein TAO1 (RGA9), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018652971.1
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |||||||*||||||||=||||
targets:2018   GAAGUCGAAUUAUCAUUACAA   2038

2.5 PREDICTED: Brassica rapa disease resistance protein TAO1 (RGA9), transcript variant X1, mRNA NA coding protein psRNATarget
XM_009141842.2
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  *||||=|||||||||||*|||
targets:824   CAAGUUGUAUUAUCAUCUCAA   844

2.5 PREDICTED: Brassica rapa uncharacterized LOC103864079 (LOC103864079), mRNA uncharacterized LOC103864079(LOC103864079) coding protein psRNATarget
XM_018657076.1
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |||||||*|||||*|||||||
targets:470   GAAGUCGGAUUAUAAUCACAA   490

2.5 PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC108871093), mRNA NA coding protein psRNATarget
XM_009111202.2
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |=|||||*|||||*|||||||
targets:1368   GGAGUCGGAUUAUAAUCACAA   1388

2.5 PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103835100), transcript variant X2, mRNA probable disease resistance protein RPP1(LOC103835100) coding protein psRNATarget
XM_009133014.2
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |=|||||*|||||*|||||||
targets:1297   GGAGUCGGAUUAUAAUCACAA   1317

2.5 PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103855958), transcript variant X6, mRNA probable disease resistance protein RPP1(LOC103855958) coding protein psRNATarget
XM_009111201.2
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |=|||||*|||||*|||||||
targets:1538   GGAGUCGGAUUAUAAUCACAA   1558

2.5 PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103835100), transcript variant X1, mRNA probable disease resistance protein RPP1(LOC103835100) coding protein psRNATarget
XM_009133013.2
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |=|||||*|||||*|||||||
targets:1300   GGAGUCGGAUUAUAAUCACAA   1320

2.5 PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103855958), transcript variant X5, mRNA probable disease resistance protein RPP1(LOC103855958) coding protein psRNATarget
XM_018657183.1
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |=|||||*|||||*|||||||
targets:1301   GGAGUCGGAUUAUAAUCACAA   1321

2.5 PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103855958), transcript variant X4, mRNA NA coding protein psRNATarget
XM_018657182.1
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |=|||||*|||||*|||||||
targets:1298   GGAGUCGGAUUAUAAUCACAA   1318

2.5 PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103855958), transcript variant X3, mRNA NA coding protein psRNATarget
XM_009133012.2
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |=|||||*|||||*|||||||
targets:1299   GGAGUCGGAUUAUAAUCACAA   1319

2.5 PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103855958), transcript variant X1, mRNA probable disease resistance protein RPP1(LOC103855958) coding protein psRNATarget
XM_018657075.1
ncRNA:21   CUUCAGCAUAAUAGUAGUGUU   1
  |*|||||*|||||*|||||||
targets:1200   GUAGUCGGAUUAUAAUCACAA   1220

2.5 PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103855905), mRNA NA coding protein psRNATarget

Reference

1 PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa";
Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y;
J Exp Bot. 63:1025-1038(2012).
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