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BaseInfo

ncRNA ID	bra-miR156c-3p
Species	Brassica rapa
Class	miRNA
Genome position	chrA3:28490294-28490397 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	22
Mature sequence(if miRNA)	9 - GCUCACUGCUCUAUCUGUCAGA - 30
Stem-loop(if miRNA)	C  AUA   A        -    -         A   ---     CUU     G  GC   GAA CUGACAGA AGAG AGUGAGCAC CAA   AGGCA   UGCAU U  ||   ||| |||||||| |||| ||||||||| |||   |||||   ||||| U  CG   CUU GACUGUCU UCUC UCACUCGUG GUU   UUCGU   ACGUA C U  -GC   A        A    G         C   CUC     -UU     G
Stem-loop sequence	CGCAUAGAAACUGACAGAAGAGAGUGAGCACACAAAGGCACUUUGCAUGUUCGAUGCAUUUGCUUCUCUUGCGUGCUCACUGCUCUAUCUGUCAGAUUCCGGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009127309.2	ncRNA:22   AGACUGUCUAUCUCGUCACUCG   1   *=*||=|||||||||||*|||| targets:5   GUGGAUAGAUAGAGCAGAGAGC   26 Target Full Sequence	2.5	PREDICTED: Brassica rapa protein BTR1-like (LOC103850545), transcript variant X3, mRNA	protein BTR1-like(LOC103850545)	coding protein	psRNATarget
XM_009127308.2	ncRNA:22   AGACUGUCUAUCUCGUCACUCG   1   *=*||=|||||||||||*|||| targets:5   GUGGAUAGAUAGAGCAGAGAGC   26 Target Full Sequence	2.5	PREDICTED: Brassica rapa protein BTR1-like (LOC103850545), transcript variant X2, mRNA	protein BTR1-like(LOC103850545)	coding protein	psRNATarget
XM_009127307.2	ncRNA:22   AGACUGUCUAUCUCGUCACUCG   1   *=*||=|||||||||||*|||| targets:5   GUGGAUAGAUAGAGCAGAGAGC   26 Target Full Sequence	2.5	PREDICTED: Brassica rapa protein BTR1-like (LOC103850545), transcript variant X1, mRNA	protein BTR1-like(LOC103850545)	coding protein	psRNATarget
XM_018658272.1	ncRNA:22   AGACUGUCUAUCUCGUCACUCG   1   **|*|||||||*|||||||||| targets:678   AGUAACAGAUAAAGCAGUGAGC   699 Target Full Sequence	2.5	PREDICTED: Brassica rapa caffeoylshikimate esterase (LOC103865715), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009143556.2	ncRNA:22   AGACUGUCUAUCUCGUCACUCG   1   **|*|||||||*|||||||||| targets:816   AGUAACAGAUAAAGCAGUGAGC   837 Target Full Sequence	2.5	PREDICTED: Brassica rapa caffeoylshikimate esterase (LOC103865715), transcript variant X1, mRNA	caffeoylshikimate esterase(LOC103865715)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).