| ncRNA ID | bra-miR9569-3p |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA3:27699619-27699810 [-] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 59 - ACACAGGAACAAUACUAACUCAUU - 82 |
| Stem-loop(if miRNA) |
CUA - U CA GGUU UC G A AUU UCUCC AUU UAUCUUUCAUUUCACU CAAUAAAAUCAUAUAUU UUGAUAAAUGAGUUA AUUG UCUUGUGUC AGAUAUAC G ||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||| U AGAGG UAA AUAGAAAGUAAAGUGA GUUAUUUUAGUAUGUAA AACUAUUUACUCAAU UAAC AGGACACAG UCUAUAUG U UAC G U AA AAAU CA A C GCC |
| Stem-loop sequence | CUAUCUCCAUUUUAUCUUUCAUUUCACUCACAAUAAAAUCAUAUAUUGGUUUUGAUAAAUGAGUUAUCAUUGGUCUUGUGUCAAGAUAUACAUUGUUCCGGUAUAUCUCGACACAGGAACAAUACUAACUCAUUUAUCAAUAAAAAUGUAUGAUUUUAUUGAAAGUGAAAUGAAAGAUAUAAUGGGAGACAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009124166.2 |
|
3.0 | PREDICTED: Brassica rapa glycerophosphodiester phosphodiesterase GDPD6 (LOC103847122), transcript variant X1, mRNA | glycerophosphodiester phosphodiesterase GDPD6(LOC103847122) | coding protein | psRNATarget | |||||||||
| XM_009124167.2 |
|
3.0 | PREDICTED: Brassica rapa glycerophosphodiester phosphodiesterase GDPD6 (LOC103847122), transcript variant X2, mRNA | glycerophosphodiester phosphodiesterase GDPD6(LOC103847122) | coding protein | psRNATarget | |||||||||
| AB300314.1 |
|
3.0 | Brassica rapa BcGDPD mRNA for glycerophosphodiester phosphodiesterase, complete cds | NA | coding protein | psRNATarget |
| 1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |