Search result

BaseInfo

ncRNA ID	novel_gma_miR735
Species	Glycine max
Class	miRNA
Genome position	Chr17:35453413-35453499 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451634;SRR1451636;SRR1451640;SRR1451646;SRR1451647;SRR1451616;SRR1451625;SRR1451626;SRR1451627
Length	21
Mature sequence(if miRNA)	1 - UCCUUAGGCAGAAUGAUGACC - 21
Stem-loop(if miRNA)	-UUA       -C       ------           C  AUUA   A     AUUAUUC  CUUAAGG      UAGUUGUCUGG UU    UGU A     |||||||  |||||||      ||||||||||| ||    ||| A     UAGUAAG  GGAUUCC      AUCAACAGACC AA    ACA G CCAG       AC       UUUUGG           A  ----   A
Stem-loop sequence	UUAAUUAUUCCCUUAAGGUAGUUGUCUGGCUUAUUAUGUAAAGAACAAAACCAGACAACUAGGUUUUCCUUAGGCAGAAUGAUGACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003529422.3	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   **|||*||||||||||||||| targets:535   CUUCAGCAUUCUGCCUAAGGA   555 Target Full Sequence	1.0	PREDICTED: Glycine max ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like (LOC100818113), mRNA	ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like(LOC100818113)	coding protein	psRNATarget
XM_003556720.3	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   **|||*|=||||||||||||| targets:615   CUUCAGCGUUCUGCCUAAGGA   635 Target Full Sequence	2.0	PREDICTED: Glycine max ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like (LOC100801721), mRNA	ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like(LOC100801721)	coding protein	psRNATarget
XM_014773104.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:180   GGUCGUCAUUUUGCCUAAGGA   200 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102667191 (LOC102667191), partial mRNA	uncharacterized LOC102667191(LOC102667191)	coding protein	psRNATarget
XM_006588116.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:57   GGUCGUCAUUUUGCCUAAGGA   77 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102662614 (LOC102662614), mRNA	uncharacterized LOC102662614(LOC102662614)	coding protein	psRNATarget
XM_006593076.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:180   GGUCGUCAUUUUGCCUAAGGA   200 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102660366 (LOC102660366), mRNA	uncharacterized LOC102660366(LOC102660366)	coding protein	psRNATarget
XM_014764183.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:1456   GGUCGUCAUUUUGCCUAAGGA   1476 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102661716 (LOC102661716), transcript variant X2, mRNA	uncharacterized LOC102661716(LOC102661716)	coding protein	psRNATarget
XM_006591223.2	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:1420   GGUCGUCAUUUUGCCUAAGGA   1440 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102661716 (LOC102661716), transcript variant X3, mRNA	uncharacterized LOC102661716(LOC102661716)	coding protein	psRNATarget
XM_014764182.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:1456   GGUCGUCAUUUUGCCUAAGGA   1476 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102661716 (LOC102661716), transcript variant X1, mRNA	uncharacterized LOC102661716(LOC102661716)	coding protein	psRNATarget
XM_014779275.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:2017   GGUCGUCAUUUUGCCUAAGGA   2037 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X7, mRNA	uncharacterized LOC100792767(LOC100792767)	coding protein	psRNATarget
AB934276.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:1982   GGUCGUCAUUUUGCCUAAGGA   2002 Target Full Sequence	2.5	Glycine max GmTNP3a mRNA for transposase, complete cds, strain: L72-2040	NA	coding protein	psRNATarget
AB934277.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:1979   GGUCGUCAUUUUGCCUAAGGA   1999 Target Full Sequence	2.5	Glycine max GmTNP3b mRNA for transposase, complete cds, strain: L72-2040	NA	coding protein	psRNATarget
XM_014779274.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:2017   GGUCGUCAUUUUGCCUAAGGA   2037 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X6, mRNA	uncharacterized LOC100792767(LOC100792767)	coding protein	psRNATarget
XM_014779273.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:1970   GGUCGUCAUUUUGCCUAAGGA   1990 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X5, mRNA	uncharacterized LOC100792767(LOC100792767)	coding protein	psRNATarget
XM_014779270.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:2017   GGUCGUCAUUUUGCCUAAGGA   2037 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X2, mRNA	uncharacterized LOC100792767(LOC100792767)	coding protein	psRNATarget
XM_014779271.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:2138   GGUCGUCAUUUUGCCUAAGGA   2158 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X3, mRNA	uncharacterized LOC100792767(LOC100792767)	coding protein	psRNATarget
XM_014763083.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:3528   GGUCGUCAUUUUGCCUAAGGA   3548 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106794966 (LOC106794966), transcript variant X2, mRNA	uncharacterized LOC106794966(LOC106794966)	coding protein	psRNATarget
XM_014779272.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:3160   GGUCGUCAUUUUGCCUAAGGA   3180 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100792767 (LOC100792767), transcript variant X4, mRNA	uncharacterized LOC100792767(LOC100792767)	coding protein	psRNATarget
AB934278.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:3971   GGUCGUCAUUUUGCCUAAGGA   3991 Target Full Sequence	2.5	Glycine max GmTNP4a mRNA for transposase, complete cds, strain: L72-2040	NA	coding protein	psRNATarget
AB934279.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||=|||||||||| targets:3971   GGUCGUCAUUUUGCCUAAGGA   3991 Target Full Sequence	2.5	Glycine max GmTNP4b mRNA for transposase, complete cds, strain: L72-2040	NA	coding protein	psRNATarget
XM_006589806.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   |||||||*||=|||||||||| targets:63   GGUCAUCCUUUUGCCUAAGGA   83 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102663555 (LOC102663555), mRNA	uncharacterized LOC102663555(LOC102663555)	coding protein	psRNATarget
XM_014770450.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||||*|||||||| targets:780   GGUCGUCAUUCUACCUAAGGA   800 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106796841 (LOC106796841), mRNA	uncharacterized LOC106796841(LOC106796841)	coding protein	psRNATarget
XM_014767501.1	ncRNA:21   CCAGUAGUAAGACGGAUUCCU   1   ||||=|||||||*|||||||| targets:1038   GGUCGUCAUUCUACCUAAGGA   1058 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106796055 (LOC106796055), partial mRNA	uncharacterized LOC106796055(LOC106796055)	coding protein	psRNATarget