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BaseInfo

ncRNA ID	bra-miR9569-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA3:27699619-27699810 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	113 - UGAGUUAUCAUUGGUCUUGUG - 133
Stem-loop(if miRNA)	CUA     -   U                CA                 GGUU               UC    G         A        AUU    UCUCC AUU UAUCUUUCAUUUCACU  CAAUAAAAUCAUAUAUU    UUGAUAAAUGAGUUA  AUUG UCUUGUGUC AGAUAUAC   G    ||||| ||| ||||||||||||||||  |||||||||||||||||    |||||||||||||||  |||| ||||||||| ||||||||   U    AGAGG UAA AUAGAAAGUAAAGUGA  GUUAUUUUAGUAUGUAA    AACUAUUUACUCAAU  UAAC AGGACACAG UCUAUAUG   U UAC     G   U                AA                 AAAU               CA    A         C        GCC
Stem-loop sequence	CUAUCUCCAUUUUAUCUUUCAUUUCACUCACAAUAAAAUCAUAUAUUGGUUUUGAUAAAUGAGUUAUCAUUGGUCUUGUGUCAAGAUAUACAUUGUUCCGGUAUAUCUCGACACAGGAACAAUACUAACUCAUUUAUCAAUAAAAAUGUAUGAUUUUAUUGAAAGUGAAAUGAAAGAUAUAAUGGGAGACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009131223.2	ncRNA:21   GUGUUCUGGUUACUAUUGAGU   1   **=|=|*|||||||||||||| targets:1465   GCUAGGUCCAAUGAUAACUCA   1485 Target Full Sequence	3.0	PREDICTED: Brassica rapa acyltransferase-like protein At3g26840, chloroplastic (LOC103854288), mRNA	acyltransferase-like protein At3g26840, chloroplastic(LOC103854288)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).