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BaseInfo

ncRNA ID	bra-miR824
Species	Brassica rapa
Class	miRNA
Genome position	chrA3:25613141-25613772 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	22 - UAGACCAUUUGUGAGAAGGGA - 42
Stem-loop(if miRNA)	-----    UG    U               U             -UUUUGUUU     GUUCA          --AAUC       AGUAUUAAGGAAAAUAGCUUGUUCAACAUAUCACACUACUCUUUUAGAAACAAAACUAUAUUUUAGAUGCUUUUCCAGCUUGAUAUACGUUGUUUUGUUAUGUAUACCUGUAUUCUCCCGGCUACCAAAACGUUAAGAAAUAAGGUGAACAUCUCCCCAAAACCUGCAUCCAAUUAGAAAGGUCUAGGUCACAGCCAUUACUUGCUAUCUCUCGAUUAAGCUAUUUUAU CCUC     GAGU  UCUU CAUGUCUAGACCAUU GUGAGAAGGGAUU         GCACC     CCCCACUCUC      UGUAGUG                                                                                                                                                                                                                                     U ||||     ||||  |||| ||||||||||||||| |||||||||||||         |||||     ||||||||||      |||||||                                                                                                                                                                                                                                     U GGAG     CUCA  GGAG GUGUAGAUCUGGUAG UACUCUUCCCUGA         CGUGG     GGGGUGAGGG      UAAAUGA                                                                                                                                                                                                                                     C     UUACU    GU    C               C             UUAUUGGGU     ---AA          GUUCAA       UACUUCAUUUGAUCACAUCGAUUCAUCACGUUCUAAGUUCAAGAAUCGAUAGUACUUUAUGGAGAUUGUGAGGUCUGUCUCCAAACUGUAGAGCAUCCUUUUUACAGACAGGCUUCACACCGUAUCAGGUUUUUGUUUUAUAAUACAUACGUCGUAGGUCUUUACAGUACUUACCUGAAUUACAUAAAAUAAAAUAUGAAUUGAGGACUUACUAGACUACUACUACUAU
Stem-loop sequence	CCUCGAGUUGUCUUUCAUGUCUAGACCAUUUGUGAGAAGGGAUUUUUUGUUUGCACCGUUCACCCCACUCUCAAUCUGUAGUGAGUAUUAAGGAAAAUAGCUUGUUCAACAUAUCACACUACUCUUUUAGAAACAAAACUAUAUUUUAGAUGCUUUUCCAGCUUGAUAUACGUUGUUUUGUUAUGUAUACCUGUAUUCUCCCGGCUACCAAAACGUUAAGAAAUAAGGUGAACAUCUCCCCAAAACCUGCAUCCAAUUAGAAAGGUCUAGGUCACAGCCAUUACUUGCUAUCUCUCGAUUAAGCUAUUUUAUUUCUAUCAUCAUCAUCAGAUCAUUCAGGAGUUAAGUAUAAAAUAAAAUACAUUAAGUCCAUUCAUGACAUUUCUGGAUGCUGCAUACAUAAUAUUUUGUUUUUGGACUAUGCCACACUUCGGACAGACAUUUUUCCUACGAGAUGUCAAACCUCUGUCUGGAGUGUUAGAGGUAUUUCAUGAUAGCUAAGAACUUGAAUCUUGCACUACUUAGCUACACUAGUUUACUUCAUAGUAAAUAACUUGGGGAGUGGGGAAGGUGCUGGGUUAUUAGUCCCUUCUCAUCGAUGGUCUAGAUGUGCGAGGUGACUCUCAUUGAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009117024.2	ncRNA:21   AGGGAAGAGUGUUUACCAGAU   1   ||=|||||||||||||||||| targets:760   UCUCUUCUCACAAAUGGUCUA   780 Target Full Sequence	1.0	PREDICTED: Brassica rapa agamous-like MADS-box protein AGL16 (LOC103840485), mRNA	agamous-like MADS-box protein AGL16(LOC103840485)	coding protein	psRNATarget
XM_009140023.2	ncRNA:21   AGGGAAGAGUGUUUACCAGAU   1   ||=|||||||||||||||||| targets:760   UCUCUUCUCACAAAUGGUCUA   780 Target Full Sequence	1.0	PREDICTED: Brassica rapa agamous-like MADS-box protein AGL16 (LOC103862329), mRNA	agamous-like MADS-box protein AGL16(LOC103862329)	coding protein	psRNATarget

Reference

1	PMID:17704216 "MicroRNA-mediated regulation of stomatal development in Arabidopsis"; Kutter C, Schob H, Stadler M, Meins F Jr, Si-Ammour A; Plant Cell. 19:2417-2429(2007).
2	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).