ncRNA ID | bra-miR168c-3p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA3:23668240-23668372 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 92 - CCCGCCUUGCAUCAACUGAAU - 112 |
Stem-loop(if miRNA) |
GAA       --C      G      C          U     CA   A  A  GG     --UU   U    UCACCGU   GGGCUC GAUUCG UUGGUGCAGG CGGGA  CAA UC CU  UGCUU    GCC U    |||||||   |||||| |||||| |||||||||| |||||  ||| || ||  |||||    ||| A    AGUGGUA   UCCGAG CUAAGU AACUACGUUC GCCCU  GUU AG GG  ACGAG    UGG U CAA       ACC      G      C          C     CG   -  -  --     UGUU   U |
Stem-loop sequence | GAAUCACCGUCGGGCUCGGAUUCGCUUGGUGCAGGUCGGGACACAAAUCACUGGUGCUUUUGCCUUAUUGGUUUGUGAGCAGGGAUUGGCUCCCGCCUUGCAUCAACUGAAUCGGAGCCUCCAAUGGUGAAAC |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |