ncRNA ID | novel_gma_miR711 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr14:9260349-9260454 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451634 |
Length | 22 |
Mature sequence(if miRNA) | 85 - AGAAUCAUGAUUUCCAGGCAUG - 106 |
Stem-loop(if miRNA) |
--      -       A    C  CU   C       ---C   GAUCAAUCUAA   UGCUUG AAAUCAU AUUC UG  AAU AUGUUUC    GAU           C   |||||| ||||||| |||| ||  ||| |||||||    |||   ACGGAC UUUAGUA UAAG AC  UUA UACAAAG    CUU           G GU      C       C    A  UC   A       AACU   UCUCAUUUUAA |
Stem-loop sequence | UGCUUGAAAUCAUAAUUCCUGCUAAUCAUGUUUCCGAUGAUCAAUCUAACGAAUUUUACUCUUUCUCAAGAAACAUAAUUCUCAAGAAUCAUGAUUUCCAGGCAUG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003522362.3 |
|
1.5 | PREDICTED: Glycine max probable galactinol--sucrose galactosyltransferase 2 (LOC100816978), transcript variant X1, mRNA | probable galactinol--sucrose galactosyltransferase 2(LOC100816978) | coding protein | psRNATarget | |||||||||
XM_003524080.3 |
|
2.0 | PREDICTED: Glycine max GATA transcription factor 26-like (LOC100799745), mRNA | GATA transcription factor 26-like(LOC100799745) | coding protein | psRNATarget |