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BaseInfo

ncRNA ID novel_gma_miR710
Species Glycine max
Class miRNA
Genome position Chr14:38292174-38292279 [-]
Reference genome Glycine_max_v2.0
Source SRR1451634;SRR1451640;SRR1451641;SRR1451642;SRR1451648
Length 21
Mature sequence(if miRNA) 1 - UUUACAAAGAAAAAUGGACCC - 21
Stem-loop(if miRNA) --   AAC              A     AUA               --U  AAA
  GUC   UUUUCUUUGUAAAU UUAGA   GGUUUUCUUUCUUUU   CC   A
  |||   |||||||||||||| |||||   |||||||||||||||   ||   U
  CAG   AAAAGAAACAUUUA AAUUU   CCAAAAGGAAGAAAA   GG   A
CC   GUA              C     -AA               CCC  AAC
Stem-loop sequence GUCAACUUUUCUUUGUAAAUAUUAGAAUAGGUUUUCUUUCUUUUUCCAAAAUACAAGGCCCAAAAGAAGGAAAACCAAUUUAACAUUUACAAAGAAAAAUGGACCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003554364.3
ncRNA:21   CCCAGGUAAAAAGAAACAUUU   1
  **||=|*||||||||||||||
targets:2534   UAGUUCUUUUUUCUUUGUAAA   2554

2.0 PREDICTED: Glycine max leucine-rich repeat receptor-like protein kinase PXC1 (LOC100781702), mRNA leucine-rich repeat receptor-like protein kinase PXC1(LOC100781702) coding protein psRNATarget
XM_014774309.1
ncRNA:21   CCCAGGUAAAAAGAAACAUUU   1
  **|*||||||||||||||||*
targets:377   UAGACCAUUUUUCUUUGUAAU   397

2.0 PREDICTED: Glycine max protein SHOOT GRAVITROPISM 6-like (LOC106798336), mRNA protein SHOOT GRAVITROPISM 6-like(LOC106798336) coding protein psRNATarget
XM_003545895.3
ncRNA:21   CCCAGGUAAAAAGAAACAUUU   1
  ***|*||||||||||||||||
targets:771   UUUUACAUUUUUCUUUGUAAA   791

2.0 PREDICTED: Glycine max 16.9 kDa class I heat shock protein 1-like (LOC100813153), mRNA 16.9 kDa class I heat shock protein 1-like(LOC100813153) coding protein psRNATarget
XM_003519052.3
ncRNA:21   CCCAGGUAAAAAGAAACAUUU   1
  ***||||||||||||||*|||
targets:1666   UUAUCCAUUUUUCUUUGGAAA   1686

2.5 PREDICTED: Glycine max probable inactive purple acid phosphatase 16 (LOC100803047), mRNA probable inactive purple acid phosphatase 16(LOC100803047) coding protein psRNATarget
AK245023.1
ncRNA:21   CCCAGGUAAAAAGAAACAUUU   1
  **||=||*||||||||||||*
targets:1902   AUGUUCAAUUUUCUUUGUAAC   1922

3.0 Glycine max cDNA, clone: GMFL01-19-D11 NA coding protein psRNATarget
XM_003556106.3
ncRNA:21   CCCAGGUAAAAAGAAACAUUU   1
  **||=||*||||||||||||*
targets:1933   AUGUUCAAUUUUCUUUGUAAC   1953

3.0 PREDICTED: Glycine max UPF0496 protein 4-like (LOC100818059), mRNA UPF0496 protein 4-like(LOC100818059) coding protein psRNATarget