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BaseInfo

ncRNA ID bra-miR168c-5p
Species Brassica rapa
Class miRNA
Genome position chrA3:23668240-23668372 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 22 - UCGCUUGGUGCAGGUCGGGAC - 42
Stem-loop(if miRNA) GAA       --C      G      C          U     CA   A  A  GG     --UU   U
   UCACCGU   GGGCUC GAUUCG UUGGUGCAGG CGGGA  CAA UC CU  UGCUU    GCC U
   |||||||   |||||| |||||| |||||||||| |||||  ||| || ||  |||||    ||| A
   AGUGGUA   UCCGAG CUAAGU AACUACGUUC GCCCU  GUU AG GG  ACGAG    UGG U
CAA       ACC      G      C          C     CG   -  -  --     UGUU   U
Stem-loop sequence GAAUCACCGUCGGGCUCGGAUUCGCUUGGUGCAGGUCGGGACACAAAUCACUGGUGCUUUUGCCUUAUUGGUUUGUGAGCAGGGAUUGGCUCCCGCCUUGCAUCAACUGAAUCGGAGCCUCCAAUGGUGAAAC

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).