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BaseInfo

ncRNA ID novel_gma_miR700
Species Glycine max
Class miRNA
Genome position Chr8:35279081-35279173 [+]
Reference genome Glycine_max_v2.0
Source SRR1294478
Length 23
Mature sequence(if miRNA) 71 - GAUUGAUUUUACUUUGAGAGAAG - 93
Stem-loop(if miRNA) --    C  U   C         CU       C    C         A
  UCUC CG AAG UAAAAUCAA  UAUGCAC UUAA UUUUAUAGA G
  |||| || ||| |||||||||  ||||||| |||| |||||||||
  AGAG GU UUC AUUUUAGUU  GUACGUG AAUU AGAAUAUCU C
GA    A  -   -         AG       -    A         U
Stem-loop sequence UCUCCCGUAAGCUAAAAUCAACUUAUGCACCUUAACUUUUAUAGAAGCUUCUAUAAGAAUUAAGUGCAUGGAUUGAUUUUACUUUGAGAGAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003516913.3
ncRNA:23   GA-AGAGAGUUUCAUUUUAGUUAG   1
  ||-||||*|||||*||||||||||
targets:111   CUAUCUCCCAAAGAAAAAUCAAUC   134

2.5 PREDICTED: Glycine max trihelix transcription factor GT-3b-like (LOC100791013), mRNA trihelix transcription factor GT-3b-like(LOC100791013) coding protein psRNATarget
AK246046.1
ncRNA:23   GAAGAGAGUUUCAUUUUAGUUAG   1
  **||||*|||||*||||||||||
targets:1   GAUCUCCCAAAGAAAAAUCAAUC   23

2.5 Glycine max cDNA, clone: GMFL01-49-M14 NA coding protein psRNATarget
XM_014766225.1
ncRNA:23   GAAGAGAGUUUCAUUUUAGUUAG   1
  |||*|=*||=|||||||||||||
targets:8   CUUGUUACAGAGUAAAAUCAAUC   30

3.0 PREDICTED: Glycine max uncharacterized LOC102661012 (LOC102661012), mRNA uncharacterized LOC102661012(LOC102661012) coding protein psRNATarget